| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1598 |
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| Symbol | |
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| ID | 3515563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | - |
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| Start bp | 1953960 |
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| End bp | 1955129 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637670291 |
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| Product | hlyD family secretion protein |
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| Protein accession | YP_264880 |
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| Protein GI | 71066153 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0549137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGACT ATAAATATAC GCCCACCACC ATTAAAGTGG GTCGCTCAAG ATTGAGTATT
TGGATCGGAT TAATCGGCAT CGTGGTCTTG CTCGTATGGG CTTCTTTTGC CAAAATCGAT
CAGGTTACTC GTGCAAAAGC CACTGTGATT GCCAGTGCTC GAACTCAAGA GATTCAAGCC
CCAGAAGGCG GTGTCCTGAC AGAGCTTGCA GTTACTGAAG GACAGGAAGT GAAGGCCGGA
CAGCTGCTTG TGGTCTTAGA AGAAGAGCGA GCCAAAGCAG CTTTAGATAA CTCTGCCTCT
AACACAGCGG CACTAAAGGC CAAGCTGGCT CGACTAAATG CGGAAATTTT TGAGAAGCCT
TTGGTTTTCA CTAAAGATGT TAAAAATTAT CCTGAATACG TCCAAAACCA AACCGCACTT
TATAATCGCC GCCGGCAAGC CATCAATGAG GAAGTGTCTT CTCTTGAAGT CATGCTGGTG
CTGGCAGAAA AAGAGTTGAG CATGAATGAG CCGTTATTAG AATATGGCGA TGTCAGTCAA
GCAGATGTGA TTAAATTGCA CCGTCAAGTG GCTGATATTG AAGCGCAAAT TAATAATAAG
CGAAATAAAT ATTTTGAAGA AGCGCAAGCA GAAATGACCA AGGCGCAAGA AGAGCTAGAC
ACTGAGCTTG AGCAACTTCG AGATCGTGTA CACGTCTTAG AAGAAAAACG ATTGATGTCG
CCGACAGATG GCAAAATTAA AAATATCAAC GTGACCACTA TCGGCGGTGT CGTTAAGCCT
GGCGAAGTTA TATTGCAAAT ACTACCGACG AGTAGCGATT TGATCATTGA TGCAAAGGTA
AGTCCTGCGG ATATTGCTTA TGTCAAAGAA GGTCAGAAAG CCACCGTGAA GCTTGATGCT
TACGACTATT CAATCTTTGG CGCAATGAAT GGCACAGTGA GCTATATCAG CCCAGATACC
TTGATGGAGC AAACACCGAA AGGAGAGGAG CCTTATTATC GAGTGTTAAT TATTATTACC
GGTGCTGAGT TTAAGGGTAG AGAGGATAGC ATAGTCATCA AACCTGGTAT GACTGCTTCT
GTCGACATTA AAGCCATGGA GCGGACAGTA TTGTCTTACC TAACCAAGCC TATTACGAAG
ACTTTATCAG AAGGAATGGG TGAGCGTTAA
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| Protein sequence | MSDYKYTPTT IKVGRSRLSI WIGLIGIVVL LVWASFAKID QVTRAKATVI ASARTQEIQA
PEGGVLTELA VTEGQEVKAG QLLVVLEEER AKAALDNSAS NTAALKAKLA RLNAEIFEKP
LVFTKDVKNY PEYVQNQTAL YNRRRQAINE EVSSLEVMLV LAEKELSMNE PLLEYGDVSQ
ADVIKLHRQV ADIEAQINNK RNKYFEEAQA EMTKAQEELD TELEQLRDRV HVLEEKRLMS
PTDGKIKNIN VTTIGGVVKP GEVILQILPT SSDLIIDAKV SPADIAYVKE GQKATVKLDA
YDYSIFGAMN GTVSYISPDT LMEQTPKGEE PYYRVLIIIT GAEFKGREDS IVIKPGMTAS
VDIKAMERTV LSYLTKPITK TLSEGMGER
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