| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1577 |
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| Symbol | oprM |
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| ID | 3515541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 1931653 |
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| End bp | 1933473 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637670269 |
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| Product | outer membrane efflux protein, OprM |
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| Protein accession | YP_264859 |
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| Protein GI | 71066132 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000000543553 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.404493 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACTA AAAAAATGTT TACCAATAAC CCAGCAGCGG TGGCGGTCTC TGCTACCTTT
GCGCAACCGG CTCTATCACG CTTGCGCAGA AATGGCAGTC GTTTAATAGG TCTAACAGCA
TTAGCGATGA GCATGGCAGC TTGTAATACC ATTCCAAAGG CCGATACGCG TCCTGTGCTG
GCAGTGCCTA ACCTTCCTAT CGAACAAACC TATGACGCGT TTGATAAAGA AACCGTTAGT
AATGCTCAGC AAGCCAGTCT GGCTGGTCAA CGCTGGCAGA ATTTTTACAG CGACGAGCGT
TTAAAAGGTC TGATCGCTTT AGGTCTTCAA AACAACAAAG ACTTTGAAAG TGCTCGTTTA
GCCATCGAAA AATCCCGCGC GCAATATCAG ATTACTGATA TCAATGATTT GCCACGCATT
GATGGTAATG CTGGATACTC GCGCGCGCGT CAACGCGGAC AAACAGGCGA CAACTATAAG
GTTAACCTTG GTCTTGCCAA TTATGAGCTC GACTTTTGGG GTAAAATTGC CAGCTTAAAA
GACCAAGCGT TGCAGAATTT TTTATCAACG ACAGCGGCAA AAGACGCGAC CCAAATCAGT
CTGATTAGTA ACATTGCCCA AAGCTATGCC AATCTAAGCT ATAGCTTGGC GCAGCTACAA
TTGGCAGAAG CGACCGTAGA AAGCCGTGAG AAATCGCTGT TTATTGCCAG CAAACGCTTC
GAAGCTGGTA TTGATCCTAA ACTGCCGTCT TTGCAATCTA GTGCCTCACT TGAAAATGCC
AGACTTGCCG TTTTACGTGC CCAAAGCAGT ATTTTAAAAT CACGTAATGC ACTGCAGTTT
TTGGTTGGTG GACCGATTCC AACCAATCTG ATTCCAACGC CTGCCGTCAA TAACATCACA
AGCCAGCAAG TCTTTAGTGC CGGCTTGCCA AGTGAGCTAC TACGCTATCG TCCTGATGTC
TTGCAAGCAG AATATAATCT AAAAGCTGCT GGCGCTAATA TCGAAGTGGC GCGCGCGTCT
TACTACCCTT CTATCAGCTT AGCCAGTAAC GTCGGCTTGA GCAGCGGCAG TTTAAATGAC
TTATTCAAGA GTGGTGCTGT TAGTTGGTCA TTCGGTCCAA GCGTTAGTGT GCCTATCTTT
GATGCTGGTC GTTTAGATGC CAACTATGAT TTGGCACAAA TCGAGCGTAA GCAGACGCTT
GCAAGCTATG AGCGTTCAAT TCAAACCGCT TTCCGTGAGG TCTCTGATGT CTTGGCAACG
CGTGCAACTT TGGGCGAGCA GCTCGACGCA CAGTATCGTT TGCAAGACAA CTTTGAGCAA
ACGTATCAGA TTGCTGATGC GCGCTTTAAG GCTGGTATCG CAAACTATCT AGATGTCCTC
GATGCTCAGC GCTCGCTATT CTCAACGCAG CAAGGTATTT TGGATTTAGA GTTGCAAAAA
ATCATTAGCC AAATCGAGCT TTATCAAGTA CTAGGTGGCG GTGCCAATCT AGATATACCA
ACCGTGATTC CTGTACCGCA ACATAGAAAT CTGGTACAAG TAGTCAATGC AGCTGCCAAT
AGCAACAAGG CGAAAGCCAC TGATGCTATC GATGCCGCAA GCTCTGCGCG TGTGCTCTCT
GCCCAAGAAG CCCTTGCGAT TAAACAAGCA GAACCAATAG AAAAATCGAC TTTTAAGCCA
ACTGCTGTGG TCGATATCAA CAATGATGGC AAGACTGATG CTGCGCTTGG GGTAATTACT
GAAGAAACCA CCTCAAAAGA GACACGCATC AAAGAAGTCA GTGTCGAGCA AGTGCCAGTA
ACACAGATTA TTGAGCCATA A
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| Protein sequence | MSTKKMFTNN PAAVAVSATF AQPALSRLRR NGSRLIGLTA LAMSMAACNT IPKADTRPVL
AVPNLPIEQT YDAFDKETVS NAQQASLAGQ RWQNFYSDER LKGLIALGLQ NNKDFESARL
AIEKSRAQYQ ITDINDLPRI DGNAGYSRAR QRGQTGDNYK VNLGLANYEL DFWGKIASLK
DQALQNFLST TAAKDATQIS LISNIAQSYA NLSYSLAQLQ LAEATVESRE KSLFIASKRF
EAGIDPKLPS LQSSASLENA RLAVLRAQSS ILKSRNALQF LVGGPIPTNL IPTPAVNNIT
SQQVFSAGLP SELLRYRPDV LQAEYNLKAA GANIEVARAS YYPSISLASN VGLSSGSLND
LFKSGAVSWS FGPSVSVPIF DAGRLDANYD LAQIERKQTL ASYERSIQTA FREVSDVLAT
RATLGEQLDA QYRLQDNFEQ TYQIADARFK AGIANYLDVL DAQRSLFSTQ QGILDLELQK
IISQIELYQV LGGGANLDIP TVIPVPQHRN LVQVVNAAAN SNKAKATDAI DAASSARVLS
AQEALAIKQA EPIEKSTFKP TAVVDINNDG KTDAALGVIT EETTSKETRI KEVSVEQVPV
TQIIEP
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