| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1574 |
|---|
| Symbol | ispB |
|---|
| ID | 3515538 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 1925313 |
|---|
| End bp | 1926362 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637670266 |
|---|
| Product | octaprenyl-diphosphate synthase |
|---|
| Protein accession | YP_264856 |
|---|
| Protein GI | 71066129 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.836554 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTGTA CTTCTTTATC TAACGTCGCC GCCCCATTAT CTACTGCGCC ATCAGTCAAT
CTATCAACAA CACCAACCTA TGCTAATATC CAAAGCATTG TTGCTGATGA TTTTGAGATT
ATGGACAAAC AAGTCTTTGG TAGTCTCAAT TCCAAAGTTC AGCTGGTGAT GAATGTGTCA
CAGCATGTGA TTAACGCTGG TGGCAAACGT ATGCGCCCAC TGATCACATT GTTATGCGCG
CGAATGTTTA ATGATGAGCC ATCACAGCAA GCCATGCACT TGGCGGCGAT TACTGAGATG
CTGCATACGG CAACCTTGGT ACATGATGAT GTGATTGATG AATCAGGACA GCGCCGTGGT
AAGGCTACCG CCAATGCCAC TTGGGATAAT GCCACAGCGG TACTGGTCGG TGATTATCTG
ATTGCTCGCG CTTTTAATTT GTTGGTGGGC TTTCAGAGTC TACCTTTATT GCAAGTATTC
TCAGACGGCA CTTGTGATAT CGCTGAAGGT GAAGTATTGC AGTTACAACA TCAGCATAAC
CCTGAAGCAA CTGAGCAAGA CTATCTGAAC ATCATCGATG GTAAGACTTC ACGGTTGTTT
ATGATGGCAA CTCAAGGCGC TGCGATTTTG CAAGGTCAAA TTCAGCACCT GCAAGCATTA
GCGGATTTTG GACAGCACTT TGGCAATGCC TTTCAGATCA TCGATGACGT GCTTGATTAT
AGTGGTGACA GCGAATTGAT GGGTAAAAAT CTCGGCGATG ATTTAGCGGA AGGAAAACCT
ACCCTACCAA CGATTAAAGC ACTAGAGCTA TTAAAAGACA GTAACAAAGA AGACTATGAG
CAGCTACGTA TTGCGGTGCA GACAGGAAAA ACACCAAATG CAGAGCAGTT AATCGCTTTG
GTACGTCATT CAGGCTCACT AGAGTACTGT AAACAGCGTG CGTTAGAAGA AACCAAGCTT
GCCCAACAAG CGCTCAGTAG CTTACCTGAC AATCGCTATC GTCAAGGCTT ATACCAGTTG
ACTGAACTCG CCAGCGCTCG CTTGTTATAA
|
|---|
| Protein sequence | MTCTSLSNVA APLSTAPSVN LSTTPTYANI QSIVADDFEI MDKQVFGSLN SKVQLVMNVS
QHVINAGGKR MRPLITLLCA RMFNDEPSQQ AMHLAAITEM LHTATLVHDD VIDESGQRRG
KATANATWDN ATAVLVGDYL IARAFNLLVG FQSLPLLQVF SDGTCDIAEG EVLQLQHQHN
PEATEQDYLN IIDGKTSRLF MMATQGAAIL QGQIQHLQAL ADFGQHFGNA FQIIDDVLDY
SGDSELMGKN LGDDLAEGKP TLPTIKALEL LKDSNKEDYE QLRIAVQTGK TPNAEQLIAL
VRHSGSLEYC KQRALEETKL AQQALSSLPD NRYRQGLYQL TELASARLL
|
|---|
| |