Gene Psyc_1553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_1553 
Symbol 
ID3515517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand+ 
Start bp1903694 
End bp1904797 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content49% 
IMG OID637670245 
Productputative sigma-54 interacting protein 
Protein accessionYP_264835 
Protein GI71066108 
COG category[R] General function prediction only 
COG ID[COG1162] Predicted GTPases 
TIGRFAM ID[TIGR00157] ribosome small subunit-dependent GTPase A 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0000000818297 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.17654 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATTAA TCCGGCAACG CAAACTGACT AAACAGCAGA TTCGTCGCAT CGACAAGCAG 
CAGCTGTTTA GTCAAGACAG TATTGATGAC AGTTTGATGG ATGGCGTGGT CATGGCGCAT 
TATGGCAAGC AGTTGGAGGT ACAAGTGACC AGCTTGCCAG CAGTGATACC GATGCAGCCT 
GATATTGCGC CTGATGATCC TGAGCCATTT TGGCAAACGA TGGCATTGGG TGATATTTGG 
CGCTGCCACG TACGTACGAA CTTACCGATG CTAGCGGCAG GCGATCAAGT ACGCTGGAGC 
GCTGATTCAA ACACAGGCTT TGGGCGTATC GAATCGGTCA AGCCTCGCAC CTCACTTGTC 
TCTCGCCCCG ACCGTTATCA TAAGCTCAAG CCTGTCGCCG CCAATGTTGA TATTCTTGCT 
ATCGTGTTTG CGCCCTTACC TGCTGCCGCC CCGACACTTA TTGATCGCTA TTTAGTCGTA 
TGCCATCATG CTGGAGTAAA GCCTTTATTA GTGCTCAACA AAGCCGATTT ATTGGCGCAA 
GAAAACGGCG TCGATACCAA TGAATTATTG GCGCAATATG CTTCGCTCGG TTATGAGAGC 
GTATTGACCT CAGTCGATTG TCCTGAAAAC GTCACTGATA GCGATGAGCA AGAAGGACTT 
GATGAGCTAA AACGTTACAT AGATAAAAAA CTGGTTATTT TTGCCGGTCA ATCTGGTGTC 
GGTAAAAGCA GCTTAATCAA TGCCTTGTTA CCTGAATCAG CACAAAGCGT GAATATCATC 
TCTGATAACT CAAAACTCGG TCAACATACC ACCACGACCA GTCGCTTATT GCCCTTTAAT 
CCCGATGATT TGACCCAAGG TGGCATTGTC GATACCCCCG GTATTCGCGA GTATGGTATT 
TGGCACTTGA CGCCTGATGA CATTATCTCA GGCTTTGTCG AGTTGGTAGC ATTAGCGGGC 
GACTGTCAGT TCCGCGACTG CCGCCACACT CACAATAGTA AAGGCTGCGC GTTGTGGGCG 
GCGGTTGCTG ATGGCGAGGT ATTGCAACGC CGCGTCGAAA ACCTTGTGAC GTTAAGAGAA 
GAGGCAGATA CTAAACCTTA TTAA
 
Protein sequence
MALIRQRKLT KQQIRRIDKQ QLFSQDSIDD SLMDGVVMAH YGKQLEVQVT SLPAVIPMQP 
DIAPDDPEPF WQTMALGDIW RCHVRTNLPM LAAGDQVRWS ADSNTGFGRI ESVKPRTSLV 
SRPDRYHKLK PVAANVDILA IVFAPLPAAA PTLIDRYLVV CHHAGVKPLL VLNKADLLAQ 
ENGVDTNELL AQYASLGYES VLTSVDCPEN VTDSDEQEGL DELKRYIDKK LVIFAGQSGV 
GKSSLINALL PESAQSVNII SDNSKLGQHT TTTSRLLPFN PDDLTQGGIV DTPGIREYGI 
WHLTPDDIIS GFVELVALAG DCQFRDCRHT HNSKGCALWA AVADGEVLQR RVENLVTLRE 
EADTKPY