Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyc_1530 |
Symbol | |
ID | 3515491 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter arcticus 273-4 |
Kingdom | Bacteria |
Replicon accession | NC_007204 |
Strand | - |
Start bp | 1871791 |
End bp | 1873164 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637670219 |
Product | peptidase RseP |
Protein accession | YP_264812 |
Protein GI | 71066085 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00980857 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACGTTTC TATTAACGCT CCTTGCGGCA ATATTTGTCT TAGGTCCGCT TATTGCTCTG CATGAATGGG GTCACTATAT TGTGGCGCGA CTTTGCGGCG TTAAAGTGCT CACGTATTCT ATCGGTTTTG GTCCCAAACT CTTTGGCTGG ACCAGCAAAA AAAGCGGCAT TGATTATCGT ATTTCAGCCT TACCACTCGG TGGCTACGTC AAGATGCTCG ATGAGCGTGA AGGTGAGGTG GCAAAAGAAG AGCAGCATTT AGCATTTAAT CGTCAGCATC CGCTTAAGAA AATAGCCATT GTCGCCGCCG GTCCTATCAT GAACTTTGTC ATTGCGATTG TATTGTTCTG GGTGTTATTT ATGACCCCAT CAGAACAGCT CGCCACCAAG ATTGGTCAAG TGTTACCGGA TACCCCAGCA GCGATGGCGC AGCTGCCGGT TGGTGATAAA ATCGTTGCGA TTGATGGTCA TGACGTGCAG ACGTGGGAAG GGATTAACTA TCGCCTTGCT GGGCGCATGG GTGAGACAAC CAATATAAGT GTTACCTTGC AATCAGAAGT AGACAAGGGT GCAACCAAGA CCTACCAAGC ACCTATTAAA GAGTTTATGC AAGGCGCGGC GCAAGGCAAA GATGCGCTAT CAAGCTTTGG TATGATACCG TGGCAACCGA ATATTGCACC GATAGTCGGC GATTTAACGC CTGATGGCGC GGCCAGTCGT CAAGGTCTAA AAGTTAGTGA CCGTATCACT GCTATTAATG ATGAAGCAAT TAACGACTGG ATCAGCGCCA CTCGTATTAT TCGCGATAAT CCTGAGACTT TGCTGACATT TAGCGTATTG CGTGATGATA AGCCGATTGA ATTACAGATT ATGCCGCAAG GTAAAAAAGA CAATTTAGGT AACGATTATG GACAAATTGG TGCTATGGTG GCACAGTCTG AGATTATTAT TCCTGATGAA TACAAAACCA CTGTGGTCTA TGGTCCTGGT GAGTCGTTGA TAAAGTCGTT TGAAAAGACG GAACAATTGG CTGTCATGAC TGTCAGCTCA ATGGGCAAGA TGCTATCAGG TATGATTGGT CTTGATAATT TATCAGGTCC GATTACCATT GCAAAAGTTG CCAAGCAAAG CTTTGATATC AGTTGGCAAA TGGTGTTGTC TACCGCGGCT TTAATCAGTT TGAGCCTTGC TGTCCTGAAT CTGTTGCCCA TTCCGGTATT AGATGGCGGT CATATTGTCT ATTATCTGAT CGAGCTGATA CGCGGTAAGC CACTCTCTGA AGGCGTGCAA ATGGTGGGCT TAAATATCGG CTTACTCTTG CTGGCAGGTT TCATGGTGTT AGCAATTGGT AATGATATCA GTCGGCTTTT TTGA
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Protein sequence | MTFLLTLLAA IFVLGPLIAL HEWGHYIVAR LCGVKVLTYS IGFGPKLFGW TSKKSGIDYR ISALPLGGYV KMLDEREGEV AKEEQHLAFN RQHPLKKIAI VAAGPIMNFV IAIVLFWVLF MTPSEQLATK IGQVLPDTPA AMAQLPVGDK IVAIDGHDVQ TWEGINYRLA GRMGETTNIS VTLQSEVDKG ATKTYQAPIK EFMQGAAQGK DALSSFGMIP WQPNIAPIVG DLTPDGAASR QGLKVSDRIT AINDEAINDW ISATRIIRDN PETLLTFSVL RDDKPIELQI MPQGKKDNLG NDYGQIGAMV AQSEIIIPDE YKTTVVYGPG ESLIKSFEKT EQLAVMTVSS MGKMLSGMIG LDNLSGPITI AKVAKQSFDI SWQMVLSTAA LISLSLAVLN LLPIPVLDGG HIVYYLIELI RGKPLSEGVQ MVGLNIGLLL LAGFMVLAIG NDISRLF
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