| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1484 |
|---|
| Symbol | mfd |
|---|
| ID | 3515445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 1801921 |
|---|
| End bp | 1805652 |
|---|
| Gene Length | 3732 bp |
|---|
| Protein Length | 1243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637670173 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_264766 |
|---|
| Protein GI | 71066039 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.704172 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0864414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTATCA CTGCTTTGAC TGACGCCTTT GCCCCGATTA ACCAGCAGTT ATTCCCTATC
CAAAACGCTC AGCGGCGCTG GCTTGTGCCT GTGCACGGTG CGGTCAGTAG CTTGTGGCTG
GCAAGTTTGG TGCAAGCTCC TATATGGAAT GTGGCCGACC GTCTAAAAGT CGTGGTGACG
CGTGACCAAA ATCAGCTCAA TCAAATAGAG ACAGAGCTGG CGTTTTGCGG TGTCGATGCT
CATGTGTTTC CTGATTGGGA GACACTAACT TATGATGAGC TGTCACCGCA TCAAGATATT
GTCAGCGAAC GTATCAATCT ATTGACCGAT ATGCCAACCT CAGGCGTGCT GCTGATATCT
GTACAGGCAT TGATGCATCG TGTGGCACCG CCAAGCTGGT TGATTGGGCA GCATTTTGAT
TTAAGTGTGG GAGACCGATT TGATATCAAT ACCCAGCGTG CTCTACTCGC AAAAGCAGGT
TATCGAGCGG TAGACAATGT CTTTGAGCCG GGCGAATTTG CTGTACGTGG TAGTATCATT
GATATTTTTG CCATGGGTCA GCCGTTTCCA CTGCGTCTGG ACTTATTTGA TGATGAAATT
GAAACGATTC GCTTTTTTAA TCCGCAGACT CAGCGTACGC TGACCATTGA TGATCTTAAA
GCAATGATGA GTGGTAACGA TAGCAGTATG GGCAAAGAGT CGTTGTCGCT ACTGCATAAA
TTGCCAGATA TCTCAAAGCC TATTAAACAG TTTCAAATCC TACCCGCAAA AGAGTTTCCA
CTTGATGAAG GGCGTGAAAC CTTTCGCACC AATTTTGCTG CTATGTTCCC CAATAGCAAT
AGCCGTAAGT TTGAGTTGCA TAAAGATGTG ATGGCAGGCA TTGCGAGTAG TGGACTTGAA
TATTATCAGC CACTGTTTTT TGATTTAAAA GATTGGATGG TAGAAAGCAG TTTATTTTCT
TATCTGCCAA GCGATACGCT ATTCATCACT GATGAGCTGA TTAACGAAAA ACAGGCCGAT
TATTGGTCAC AAATCCAGCG CCGCTATGAA GAGCGTCGTC ACGATATTGA CAAGCCTATT
GTCGCCCCTG AGTTGCTGTA TTTATTATCA AATACCCTTA ATGAGCACCT CAATCATTAC
CCACGGGTGA TACTCAGTGC ACGTGATAAG CTTACTAGGA TGGATAATGT TGCTGCGATT
GACAGTGGAG AGCCAACGTT AGCGGTTAAG CCACAGCTGG ATATACAGCC GCAGGAATTA
TCTGATAAAC AGCAAGGGTT AGTGACGTTA AGTGCGCAAG AGCCGCCGCA GTTGGCAGTG
AACCATCAAA AAGCAGAGCC ACTTACTGAG CTATTAGCGT TTTTAGAACT ACAAGCGCAA
ACGGCGACGC CTGTATTGAT TGTCGCTGAG ACAGCAGGTC GTCGCGAGAT TCTTATTGAG
CTGTTTAAAG GTAAGATTGA TATCAAGGCT TATGATAGCT TTGAGGCGTT TTTAGCCGCC
GATAAAACCA CTGGGCTTAA TGGTAAAAAT TTGCCGCAGG TTGGTCTTAC CGTTGCGCCC
ATTGAACGCG GCGTCTATGT GCCTGAGCGC TTGGTACTGA TTAGCGAGAC CCAATTATTT
GGTCGTCAAG TACTGCAAAC ACGCCGTCGG CGCCAAAGCG GCGTTTCAGA AGAGTTCTTG
GTTAAAAGCG TGACTGAAAT AACAGACGGC AGTCCTGTTG TTCATATCGA GCATGGCATT
GGTCGTTATA ATGGTTTGAT AACATTAGAT GTTGGTGACG GTGAGCAAGA GTTTATTCAC
TTAAAGTATG CCAATGACGC CAGTATTTAT GTGCCGGTCG CTAATCTGCA AATGATTAAT
CGCTATAGTG GTGGCGACCC AGCGCTTGCA CCATTGCACA AAATTGGTAG CGGAAAATGG
GACAAAGCCA AGCAAAAAGC GCTGGAGCAA ATCCATGATG TTGCGGCTGA GCTGCTTAAT
ATGCAAGCAC GGCGTGAGGC AAAGGTCGGT ATCCACTTTA AAATAGACCC ATCACAGTAT
GAGCTGTTTG CGAGCCAATT TGCCTTTGAA GAAACACCTG ACCAAGCCAA TGCCATTCAT
GCAGTGATGG AAGATATGAG GCAAAATCAG CCCATGGATC GTCTCATCTG CGGTGATGTA
GGTTTTGGTA AAACAGAAGT GGCCATGCGA GCCGCCTTTA TTGCGGTCAG TGCCGGTTAC
CAAGTCGCGG TGCTAGTGCC GACCACCTTG CTAGCAGGTC AGCATGAAGA CAATTTCCGC
AATCGTTTTG CTGATTGGCC GGTACGTATT GAAACGCTTT CGCGCTTTGG GGGTAAAAAA
CATCAAGACA CTGTGCTAAC AGACCTCGCA GCGGGCAAGG TTGATATCGT AATCGGTACG
CATAAATTAT TGCAGCCTGA TGTGAAGTTC TCTAATCTAG GTTTAATGAT TGTCGATGAA
GAACATCGCT TTGGGGTGCG TCATAAAGAG CGCATTAAGG CGATTCAGAC CGATGTTGAT
AGTATGTCGA TGACAGCGAC TCCGATTCCT AGGACGCTCA ATATGGCGCT CTCTGGTATG
CGTGATATGT CAATTATTGC CACGCCACCT GCTCGTCGCC TTGCGATTAA AACCTTTGTT
ATGCAAAAAA CAGAAGCCCT GATGAAAGAG GCGATCTTGC GTGAGCTGTT GCGTGGTGGT
CAGGTTTATT TATTGCATAA TGATGTCGCC AGTATTGAGC GTATGGCTGA GACCATTCGT
GAGCTAGTGC CAGAAGCGCG AGTAGGGGTT GCTCATGGTC AAATGCAAGA GCGCCAACTC
GAACAAGTCA TGCAGCAGTA TTATCATAAA AAATTCAATG TGCTAATTTG TTCAACTATT
ATCGAAACCG GTATTGATGT ACCCAATGCC AATACCATTA TCATTGAACG CGCGGATAAG
TTTGGTTTGG CACAGCTACA TCAGCTGCGC GGTCGCGTGG GTCGTAGTCA TCATCAGGCT
TATTGCTATC TACTGGTACC CTCTATCAAA GGGCTCAAAG GCGATGCCAA GCGACGATTG
CATGCTATTG AGCGTGCTAA CACACTGGGT GCAGGCTTTA TGCTGGCAAG TGAAGATTTA
GAGATTCGTG GAGCTGGTGA GATACTTGGT AAGCAACAAA GTGGTAATAT GCAGGCGATA
GGCTTTAGCT TATATATGGA TATGCTGGAG CGGGCGACAA AAGCCATTAA AGCTGGTAAA
GAGCCTGATT TAAGTACACC ATTATCGCTG ACCAGTGAGA TTAATCTACA TAGCTCAGCA
TTGATACCGG AAGAATATTT GCACGATGTG CATCAGCGTT TGTTGTTTTA CAAGCGTATT
GGCAATGCCG ATGATAAAGA GGCACTGACC GATATTCGAA CTGAAATGAT TGATCGTTTT
GGTACCTTAC CAGACCAGAC CAAGCAGTTA TTTGCTGTTC ATGGACTGCG CATACAAGCT
GAGCCATTGA AAATTAATAA AATTGATGCC AATAGTAATA GTATGACGCT TGAGTTTGCA
CCCGATACGC CGGTCGATGC CTTGGCTATT ATCAAGCTGA TCCAATCAAA TGGGCAGTGC
TATCGTATGA ATGGTGCGTC TGGCATTCGT TATCAAGATG CTGATAAACT GGCAACGCCG
CAACAACGCG TCACAGTGAT TCAAGAGTTA TTAAGTTATT TTAGCAAGCA TATGGTGGCA
GAGTCGGTTT AG
|
|---|
| Protein sequence | MPITALTDAF APINQQLFPI QNAQRRWLVP VHGAVSSLWL ASLVQAPIWN VADRLKVVVT
RDQNQLNQIE TELAFCGVDA HVFPDWETLT YDELSPHQDI VSERINLLTD MPTSGVLLIS
VQALMHRVAP PSWLIGQHFD LSVGDRFDIN TQRALLAKAG YRAVDNVFEP GEFAVRGSII
DIFAMGQPFP LRLDLFDDEI ETIRFFNPQT QRTLTIDDLK AMMSGNDSSM GKESLSLLHK
LPDISKPIKQ FQILPAKEFP LDEGRETFRT NFAAMFPNSN SRKFELHKDV MAGIASSGLE
YYQPLFFDLK DWMVESSLFS YLPSDTLFIT DELINEKQAD YWSQIQRRYE ERRHDIDKPI
VAPELLYLLS NTLNEHLNHY PRVILSARDK LTRMDNVAAI DSGEPTLAVK PQLDIQPQEL
SDKQQGLVTL SAQEPPQLAV NHQKAEPLTE LLAFLELQAQ TATPVLIVAE TAGRREILIE
LFKGKIDIKA YDSFEAFLAA DKTTGLNGKN LPQVGLTVAP IERGVYVPER LVLISETQLF
GRQVLQTRRR RQSGVSEEFL VKSVTEITDG SPVVHIEHGI GRYNGLITLD VGDGEQEFIH
LKYANDASIY VPVANLQMIN RYSGGDPALA PLHKIGSGKW DKAKQKALEQ IHDVAAELLN
MQARREAKVG IHFKIDPSQY ELFASQFAFE ETPDQANAIH AVMEDMRQNQ PMDRLICGDV
GFGKTEVAMR AAFIAVSAGY QVAVLVPTTL LAGQHEDNFR NRFADWPVRI ETLSRFGGKK
HQDTVLTDLA AGKVDIVIGT HKLLQPDVKF SNLGLMIVDE EHRFGVRHKE RIKAIQTDVD
SMSMTATPIP RTLNMALSGM RDMSIIATPP ARRLAIKTFV MQKTEALMKE AILRELLRGG
QVYLLHNDVA SIERMAETIR ELVPEARVGV AHGQMQERQL EQVMQQYYHK KFNVLICSTI
IETGIDVPNA NTIIIERADK FGLAQLHQLR GRVGRSHHQA YCYLLVPSIK GLKGDAKRRL
HAIERANTLG AGFMLASEDL EIRGAGEILG KQQSGNMQAI GFSLYMDMLE RATKAIKAGK
EPDLSTPLSL TSEINLHSSA LIPEEYLHDV HQRLLFYKRI GNADDKEALT DIRTEMIDRF
GTLPDQTKQL FAVHGLRIQA EPLKINKIDA NSNSMTLEFA PDTPVDALAI IKLIQSNGQC
YRMNGASGIR YQDADKLATP QQRVTVIQEL LSYFSKHMVA ESV
|
|---|
| |