| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1460 |
|---|
| Symbol | alaS |
|---|
| ID | 3515421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 1772104 |
|---|
| End bp | 1774776 |
|---|
| Gene Length | 2673 bp |
|---|
| Protein Length | 890 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637670149 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_264742 |
|---|
| Protein GI | 71066015 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.124208 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00581407 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCAGC CATTTCGCTC AGCCGATATT CGTCAAGCTT TTATCGATTT TTTCATAAGC
AAGCAGCATA CACCCGTCGC CTCATCGAGT TTGATTCCGC ACAATGACCC GACATTGCTA
TTTACCAATG CCGGTATGAA TCAATTTAAA GAAACGTTTT TGGGTATGGA GCCGCGTGAC
TATACTCGTG CGGTAACCTC TCAAAAGTGC GTACGTGCTG GCGGCAAGCA TAATGATTTG
GATAATGTCG GCTATACCGC ACGCCATCAT ACTTTTTTTG AAATGCTTGG TAACTTCTCT
TTCGGCGATT ACTTTAAGCA AGCAGGTATT GGCTATATTT GGGAGTTTTT GACCTCGGAC
GAATGGCTTG CGATTGATAA AAATCGCTTA TATGTGACCA TTTACGAAAC CGATGATGAA
GCTTTTGATA TTTGGCATAA AGATATCGGC ATACCAAGCG AGCGTATCAT CCGTATTGGT
GATAATAAAG GCGCACCTTA CGCCTCAGAT AACTTTTGGA CGATGGGTGA TACGGGTCCT
TGCGGCCCTT GTACCGAAGT CTTTTATGAC CATGGCGCAG ATATCGAAGG CGGTCTACCG
GGCACGCCTG AAGAAGATGG CGACCGTTAT ATTGAGATTT GGAACTGCGT GTTTATGCAG
TTCAACCGTC AAAAAGACGG TACTATGCTG CCGCTACCAG CACCAAGTGT TGATACCGGC
ATGGGACTTG AGCGTATCAG CGCCATCATG CAAGGCGTTC ATGGTAACTA CGAGATAGAT
TTGTTTGTCC ATCTTATGGA TGCTGCCGCT GAGATTTTAG AGATTGAGAA TCAGCAACAG
TCGTCATTAA AGGTCATTGC TGATCATATC CGTGCGGTTT CGTTTTTGAT TGCTGACGGC
GTTACGCCAA GTAATGAAGG TCGTGGTTAT GTACTGCGCC GCGTTATTCG CCGTGCAGTA
CGTCATGGTA ATAAGCTTGG CGCAGACAGT GATTTCTTTT ATAAAATGGT TGCGCCCTTG
GTCGCTGAGA TGGGCATCGC CTACCCTGAG CTAAAAGACA AACAAAGCGT CATCGAAAAC
ACCATTCAAA AAGAAGAAGC GCAGTTCGCT AAAACCTTAG CACAAGGTTT ACGTTTACTT
GCCAGCGAGC TTGAAGGCTT GCAAGATGGT GATACTCTCT CTGGTGAAGC TGCCTTTAAG
CTTTATGATA CTTACGGCTT TCCTGTTGAC TTGACCGCTG ATATCACCCG TGAGCGCGGT
ATTGTGATTG ATGAAGCTGA GTTTGATGAA CATATGCAAG CACAGCGTGA ACGTGCGCGT
GATGCGGGCA AATTTGACGT TGATTATAGT AGTGTCATTC AAGTAGAGAA CCCAACGACC
TTTATCGGTT ATGAACAGCT CGAACAAGAA GGCGTTGCGA TCGATGCCCT TTATCAAGAT
GGCAATCCAG CAGACAGCTT AACTGAAGGT ATGGAAGGCG TTGTTGTGCT CGACCGTACG
CCGTTTTATG CTGAAGGTGG TGGTCAAGTT GGTGAGCTGG GTGAAATCCG TACCGCGACC
GGCGTCTTTG ACGTTCAAGA TACCAAAAAA TCTGGGCAAG CCATTATCCA TTATGGCGTT
GTCACTATGG GTGAGATTAA AACTAAACAA ACAGCGGATG CGCAAGTGCT CTCTAGTATC
CGTGCTGCCA GTGCCAAAAA TCACTCTGCC ACGCATCTAT TACATGCTGC ACTAAGAGAA
GTATTGGGTG ATGCGGTCAC ACAAAAAGGC TCACTGGTCT CAAGCGAAGT CTTACGTTTT
GATTTCTCAT ACGACAAGCC TGTTAGTCCC GCTGAAATCA TGCGTATCGA ACGTTTGGTC
AATGAGCAAA TCCAAGCCAA TACCCCTACC CGTATTGAGA ATATGCCTAT CGATGAGGCT
ATAAAGCAAG GTGCTATGGC GCTGTTCGGT GAAAAATATG GTAATGACGT TCGCGTGCTT
ACCATGGGCA CAGACAGTAT CGTAGATGGT CAGCGCATGC CGTTCTCTAT CGAGCTATGT
GGCGGTCTAC ATGTACAGCG TACCGGCGAT ATTGGGGTGT TAAAAATTAC TAGCGAATCA
GGCATTGCTG CTGGTATTCG CCGTATTGAA GCCGTCACAG CTATGAACGC GATTAAAAAT
ATTCAGCAAA GCGAGCAACA GCTCAGCGAG CTTGCGAGTC AGCTAAAAGT GAAACGCCCA
GAGGTCGCAC AGCGCGTGCG TACTATGGCG GATAAGCAGC GTGATTTAGA GAAGCAGCTA
GAGCGTTTAG AGCAAAAAAT CGCCAGTGCC CAAGCAGCCA ACTTGCTTGA TGAAGTGCAA
ACCATCGCAG GTATACCATT GCTTATCAGT ACACTAAGCG GCGTTGATGG TAAATCAATC
CGTACACTGA TGGACGATAT AAAATCCAAA CTACCGGATA GTGTGATTGT ATTGATTGGC
GATAAAGATG AGCAGTTGGC ATTAGCCGCA AACGTCGCCA AATCAGTGAC TGATCGCATA
AAAGCCGGCG ACATCATTCG TTATTTGGCA GGCGAGCTTG GCGGTAAAGG TGGCGGTAAA
CCTGACTATG CACAGGGCGG CGCACCAAAG TCTAATAATA GCGCTGCTGT TATCGCGGCC
TTACCTGCTT GGGTTGCAGC CCAGCTTAGC TAA
|
|---|
| Protein sequence | MSQPFRSADI RQAFIDFFIS KQHTPVASSS LIPHNDPTLL FTNAGMNQFK ETFLGMEPRD
YTRAVTSQKC VRAGGKHNDL DNVGYTARHH TFFEMLGNFS FGDYFKQAGI GYIWEFLTSD
EWLAIDKNRL YVTIYETDDE AFDIWHKDIG IPSERIIRIG DNKGAPYASD NFWTMGDTGP
CGPCTEVFYD HGADIEGGLP GTPEEDGDRY IEIWNCVFMQ FNRQKDGTML PLPAPSVDTG
MGLERISAIM QGVHGNYEID LFVHLMDAAA EILEIENQQQ SSLKVIADHI RAVSFLIADG
VTPSNEGRGY VLRRVIRRAV RHGNKLGADS DFFYKMVAPL VAEMGIAYPE LKDKQSVIEN
TIQKEEAQFA KTLAQGLRLL ASELEGLQDG DTLSGEAAFK LYDTYGFPVD LTADITRERG
IVIDEAEFDE HMQAQRERAR DAGKFDVDYS SVIQVENPTT FIGYEQLEQE GVAIDALYQD
GNPADSLTEG MEGVVVLDRT PFYAEGGGQV GELGEIRTAT GVFDVQDTKK SGQAIIHYGV
VTMGEIKTKQ TADAQVLSSI RAASAKNHSA THLLHAALRE VLGDAVTQKG SLVSSEVLRF
DFSYDKPVSP AEIMRIERLV NEQIQANTPT RIENMPIDEA IKQGAMALFG EKYGNDVRVL
TMGTDSIVDG QRMPFSIELC GGLHVQRTGD IGVLKITSES GIAAGIRRIE AVTAMNAIKN
IQQSEQQLSE LASQLKVKRP EVAQRVRTMA DKQRDLEKQL ERLEQKIASA QAANLLDEVQ
TIAGIPLLIS TLSGVDGKSI RTLMDDIKSK LPDSVIVLIG DKDEQLALAA NVAKSVTDRI
KAGDIIRYLA GELGGKGGGK PDYAQGGAPK SNNSAAVIAA LPAWVAAQLS
|
|---|
| |