| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1277 |
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| Symbol | secD |
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| ID | 3515234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 1538715 |
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| End bp | 1540592 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637669965 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_264561 |
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| Protein GI | 71065834 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000238254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATATC CCGCTTGGAA ATACCTACTC ATCACCGTCG TACTAATCAT TGCCGGTCTA
TACGCTGCTC CTAACTTATA TCCTGACGAA CCTGCCGTAC AGATTACCAG TGCCGCAGCA
GGCACACAGT TGTCTGATGG CATCTTGACT CAGTCGCAAG ATTTGTTGAA AGAAGCTGGC
TTGAACTACC ATGATGGTAC GTTTAAAGGC AACAGTGCAT TAGTACGTCT TGATAACCCA
GTCGATCAGC TCAAGGCTCA GGAAGTATTG AGAAAGAACT TGGGCGATAA CTATGTGGTC
GCACTGAACT TAGCGCAGAC AACGCCGCAA TGGTTGCGTG ATATCGGCGC AAAGCCCATG
AAACTTGGTC TTGATTTGCG TGGTGGTGTC CGTTTTGTGT TAGAAGTTGA CATGGATAAG
GCACTCGAAC AACGTCTGAC CAGTGCCAGT CGTGATATTC GACGAGATCT AAGAGCTGAG
CGTATTGCTG TTAAAGGTAT CAAAAACGAC AAGCGCACTG TGGTATTGCA TTTTTCTGAT
ACAGACAATC GTAACCGTGC ACAAAACGTG TTGCAAAGCT CAATAGGTAA TACTTTTACG
CTGCAATCTT CTATCGATGA GCAAGGTCCT GCGCTAATTT TGGCGTATAA CGATGCCACT
TTAGATGAAA TCAATAGCTA TGCGGTCAAT CAGAACCTGA ATACCCTACG CAATCGTATT
GCTGAACTTG GGGTAACAGA AGCCTTGGTA CAATCACAAG GTGCTAGCCG TATCGTCGTT
GAGCTGCCAG GTGTACAAGA TACGGCTGAG GCAAAACGTG TCCTTGGTCG TACAGCCAAC
CTTGAGTTCC GTATGGTCGC TGAAGGTGCC GAAAATTATA CGGGCGGTAT ACCCCCTGCC
GGCACTGAAG CTTTCCCATT TGAAACGCTT GATGGTCCGC CCGTATTGCT AGAGCGTCAA
GCGATCGTCA CTGGTGATAA AGTCACCAAT GCTCAGACAG GCATTGATGA AAGTGGCTCA
CCTGAGGTTA GTATCACCTT AGACAACGCT GGTGGCAAAC TGATGCAAAA TGCTACCCGT
ACCGCAGTTG GCAAACAAAT GGCTGTAGTG TTCATTGAAA ACAAGCAAAG AGTCACTTAT
AAAGAAGACT CAGCCACTGG CGAGACCGTC GAAGTACGGA CGCCTTATGC TGAAACAAAA
GTCATTAACC GTGCCAATAT CCAAGCAGTC CTTGGCTCAT CATTCCGTAT TACCGGTCTT
GATAGTAGTG CTGAAGCTGC TGAGCTTGCG CTGTTACTAC GCTCAGGCGC ATTAGCGGCA
CCGATGTATT TTGTTGAAGA GCGCACCATT GGTCCATCAC TGGGTCAGGA AAATATCGAT
AAAGGATTAT TCTCTACGCA GGTAGGTTAT TTATTAGTCT TTGCGTTTAT GATTATCTTC
TATCGCCTGT TTGGTGTGAT TGCCAATATT GCTCTAGCAG TGAACGTTAT TATCATCATC
TCTATTATGT CCATCTTAGG CTCATCACTG ACGCTACCTG GTATCGCTGG TATTGTATTA
ACCATTGGTA TGGCGGTCGA TGCCAACGTC CTAATTTTTG AGCGTATCCG TGAAGAGCTG
GCTAATGGAG TGAGACCGAA ATCGGCTATC GTAGCAGGTT TTGATCGTGC TTATAGTAGT
ATTTTCGATG CCAATATCAC AACATTACTC GTCGCTTTTA TCTTATTTTC GATTGGTACG
GGTCCGATTA AAGGCTTTGC GATTACTTTA GCAATTGGTA TCGTCAGCTC GCTGTTTACT
GCAATTTTGG TAACCCGTGC ACTGATACAA ATTGCTTATG GTAAGCGTAA ATCTATCAAA
CGTCTGAGCA TCGGTTAG
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| Protein sequence | MQYPAWKYLL ITVVLIIAGL YAAPNLYPDE PAVQITSAAA GTQLSDGILT QSQDLLKEAG
LNYHDGTFKG NSALVRLDNP VDQLKAQEVL RKNLGDNYVV ALNLAQTTPQ WLRDIGAKPM
KLGLDLRGGV RFVLEVDMDK ALEQRLTSAS RDIRRDLRAE RIAVKGIKND KRTVVLHFSD
TDNRNRAQNV LQSSIGNTFT LQSSIDEQGP ALILAYNDAT LDEINSYAVN QNLNTLRNRI
AELGVTEALV QSQGASRIVV ELPGVQDTAE AKRVLGRTAN LEFRMVAEGA ENYTGGIPPA
GTEAFPFETL DGPPVLLERQ AIVTGDKVTN AQTGIDESGS PEVSITLDNA GGKLMQNATR
TAVGKQMAVV FIENKQRVTY KEDSATGETV EVRTPYAETK VINRANIQAV LGSSFRITGL
DSSAEAAELA LLLRSGALAA PMYFVEERTI GPSLGQENID KGLFSTQVGY LLVFAFMIIF
YRLFGVIANI ALAVNVIIII SIMSILGSSL TLPGIAGIVL TIGMAVDANV LIFERIREEL
ANGVRPKSAI VAGFDRAYSS IFDANITTLL VAFILFSIGT GPIKGFAITL AIGIVSSLFT
AILVTRALIQ IAYGKRKSIK RLSIG
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