| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1260 |
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| Symbol | rpoD |
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| ID | 3515217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 1516085 |
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| End bp | 1518028 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637669948 |
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| Product | putative sigma-70 factor (RpoD) |
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| Protein accession | YP_264544 |
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| Protein GI | 71065817 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATG CAAGTAAGCG AGTATTTATG AACGATAAGT CAGTTTCTAA GTCCACATCT
CAACTGGCCA CCTTAATCCA AATGGGTAAA GAGCAAGGGT ATTTAACCTA TGCTGAGGTG
AATGACCAAC TGCCCGACTC TATTACCGAA AGCGATCAGA TCGAAGATAT TATACAAATG
CTAACCGACG TTGGCATCAA AATCTTTGAA TCTGCGCCCG ACGCCGATGA CATCTTGATG
AACGACGATT CAAGTGATGA TGACATGGCA GCGGATGAGG CAGCAGCGGT ATTGGCTTCT
GTTGAGACCG AACCTGGTCG CACCACTGAC CCTGTGCGTA TGTATATGCG TGAGATGGGT
ACGGTTGATC TATTAACCCG TGAAGGCGAA ATTGCCATTG CCAAGCGTAT CGAAGAAGGT
ATTCGTGACG TACAGCATGC CATGTCTTAC TGGCCGGGCA CGGTACAGTT CGTCCTTGAT
GAATATCAAA AAGTTCAAGA TGGCGAGAAA AAACTTTCTG ACGTCATCAC TGGTTTCTTA
GATCCTGAAA CCGAAGAAGA CAAAATCGCC GCTCAAGAAG CCAAAGAAGC GGCGAAAGAA
GAGCGCGAGC GCATCAAAGA AGAAAAAGAA AACCCTCCTA TTATCAAAGA AAAAGCCAAA
GCAAAATCTG GGCTTGATGA TGACGAGGAC GAGGACGACG TTGAAGAGGA CGCTGAAGAA
GAAACCAGCG GTATCGATCC AGAAGAAGTG CGCTTGCGCC TAGAAGAGAT TGAGCATTTA
TTTATTAAAG CCAAGCAAGC ATTGCTTGAT TATGGTCGTG GTAGTGCTCA AGCCAATGAA
GCTTATGAGC AACTGGCTAG CCGCTTTATG ATGCTAAAGC TTAACAATCG CCTATCTGAT
CAAGTCATGG CCATCATGCA TGATGTCTAT GATGACGTGC GTAAACATGA GCGTCAAATC
ATGCGTTTGG TGATTCGCCG TGGTCGTATG CCGCGCGAAG AGTTCCGTAA GACTTTCCCA
AGTAATGAAA CCAACGTTGA TTGGTTGATT GAGCGTATTA AAGGTAAGCC GGCGTTTGCT
GCCACGCTCG AGAAAGTTAC CGACGATGTT ATCTTGTTAC AACGTGCTAT CCGTGATTAT
GAGCATAAGC TCGAGATGGA AATCCACGAC ATGAAAGATG TGGCACGCCG TATGGCTATT
GGTGAAGCCA AAGCCCGCCG TGCCAAAAAA GAGATGGTTG AAGCCAACTT ACGTCTCGTT
ATCTCAATCG CCAAAAAATA CACCAACCGT GGTCTACAGT TCTTGGACTT GATTCAAGAA
GGCAACATCG GCTTGATGAA AGCAGTAGAT AAATTTGAAT ATCGCCGTGG TTATAAATTC
TCAACCTATG CCACTTGGTG GATTCGTCAG GCAATCACCC GCTCTATCGC TGACCAAGCA
CGTACCATCC GTATCCCTGT GCATATGATT GAGACCATCA ACAAAATCAA CCGTGTGTCT
CGTCAGTTAT TGCAAGAAAT GGGACGCGAG CCAACGCCTG AAGAATTAGG CGAACGTCTA
GAGATGGACG AAGTCAAAGT CCGCAAAGTG CTAAAAATTG CCAAAGAGCC TATCTCTATG
GAAACGCCAA TCGGTGATGA TGAAGACTCG CACCTAGGTG ACTTCATCGA AGATGGGACA
ATCTCAAGTC CTGTTGACGA TGCGACGGCT GCCGGTCTAC GTGAAGCAAC GCGTGATGTG
CTTGGCAACC TAACGGAACG TGAAGCTCGC GTCCTCAAAA TGCGTTTTGG TATCGATATG
CCAACCGATC ATACCTTGGA AGAAGTCGGT AAGCAGTTTG ATGTAACGCG TGAGCGTATC
CGTCAGATTG AAGCAAAAGC CTTGCGTAAG CTACGTCATC CGTCACGCTC TGAGCATCTG
CGCTCTTTCC TTGAAAATGA CTAA
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| Protein sequence | MSDASKRVFM NDKSVSKSTS QLATLIQMGK EQGYLTYAEV NDQLPDSITE SDQIEDIIQM
LTDVGIKIFE SAPDADDILM NDDSSDDDMA ADEAAAVLAS VETEPGRTTD PVRMYMREMG
TVDLLTREGE IAIAKRIEEG IRDVQHAMSY WPGTVQFVLD EYQKVQDGEK KLSDVITGFL
DPETEEDKIA AQEAKEAAKE ERERIKEEKE NPPIIKEKAK AKSGLDDDED EDDVEEDAEE
ETSGIDPEEV RLRLEEIEHL FIKAKQALLD YGRGSAQANE AYEQLASRFM MLKLNNRLSD
QVMAIMHDVY DDVRKHERQI MRLVIRRGRM PREEFRKTFP SNETNVDWLI ERIKGKPAFA
ATLEKVTDDV ILLQRAIRDY EHKLEMEIHD MKDVARRMAI GEAKARRAKK EMVEANLRLV
ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA
RTIRIPVHMI ETINKINRVS RQLLQEMGRE PTPEELGERL EMDEVKVRKV LKIAKEPISM
ETPIGDDEDS HLGDFIEDGT ISSPVDDATA AGLREATRDV LGNLTEREAR VLKMRFGIDM
PTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPSRSEHL RSFLEND
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