| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1224 |
|---|
| Symbol | hemN_rel |
|---|
| ID | 3515181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 1465912 |
|---|
| End bp | 1467237 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637669912 |
|---|
| Product | coproporphyrinogen III oxidase, anaerobic |
|---|
| Protein accession | YP_264508 |
|---|
| Protein GI | 71065781 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000380612 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0249495 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAATA TCAAACCTAA TCACCTGTTT CAGCAATCAA ACCCTCTTCA TGATGCTCAT
TCGAATGCAA TAGAGGTGAA AGACATTCCA TTGGCGTTAT ATATCCATAT CCCGTGGTGT
GTCAAAAAAT GCCCCTATTG TGATTTTAAT TCACATGAGC TACCAGTAGA CGGTCAGCTG
TCCATGTATG ATGAGTATGT AGATGCACTG TTGCAAGATG CCGCCATGCA GCAGATATTG
ACCCAAGGGC GTGAGATTGG CTCTATATTT ATCGGAGGTG GTACGCCGTC GTTGTTGCCC
ATTGCGCAGT ATCAGCGATT GTTTGATGGT TTACAGAAAT ATTATGAATT TGCTAGTGAC
ATCGAAATCA CTATGGAGGC CAATCCAGGC ACACTTGAGC ATGCACCATT TGTTGAATAC
TTAGAGGTAG GCATCAATCG TCTATCGATT GGTGTGCAAA GCTTTTCTGC TGAGCAATTA
ACCACGCTTG GACGTATTCA CAATCCTATA CAAGCACTAT CTGCGATTAA AGCCGCTCGA
GCGGCTGGCT TTGAGCGCGT AAACGTGGAT TTGATGCATG GATTGCCAGA GCAAACTAGG
AGCGAGGCGT TAGACGATAT ACAAATGGCA CACAATGCAG GTGCGACGCA TATCTCTTGG
TATCAGCTGA CCATTGAGCC TAATACCGTC TTTTATCGCA GTCAGCCGGT TTTACCCGAT
GAGGATCGTC TGGCAGATAT TGAAGAAGCA GGTCAAATAT TATTACAGAA TTTAGGCTAT
CACAATTATG AGGTATCCGC ATGGTCTGGG GCAGCAGATA AACCTTGTCG TCACAATGTC
AACTACTGGC AGTTTGGCGA TTATCTGGCA ATCGGAGCAG GGGCTCACGG CAAAGTAACG
GTTAGGGAAG GGGTCATTGA TAACAAAGTT AGCCATGAGA TGACTGCTAA CATATTGATC
AATGATGAAG AGAACAAACA AGCAGGTATC TATCGCTTTA GTAAATCTCG TATGCCAAAA
GACTATATGG AATATCAAGA GGCTCATCAG CCCGATAGGG CGTTAACACC AGCGCCAAAA
ATGATTGGCT GGCAAGCCAT TGATCAGGAT GAGTTGATTA GTGAGTTTAT GCTCAATGCC
TTACGTTTGC ATGATGGTGT AACGTGGTCG TTATTTGAGA CGCGTACAGG GCTAAGTTAT
GACAGCGTTA CGATACAAGT CACTCAATTA ATCGAGCAAG GTCTGCTGAC GGACAGTCTT
GAACAATTGC AGCCGACAGA GCTTGGAAAA AGGTACCTCA ATCAAATATT AAGAGCATTT
TTATAG
|
|---|
| Protein sequence | MSNIKPNHLF QQSNPLHDAH SNAIEVKDIP LALYIHIPWC VKKCPYCDFN SHELPVDGQL
SMYDEYVDAL LQDAAMQQIL TQGREIGSIF IGGGTPSLLP IAQYQRLFDG LQKYYEFASD
IEITMEANPG TLEHAPFVEY LEVGINRLSI GVQSFSAEQL TTLGRIHNPI QALSAIKAAR
AAGFERVNVD LMHGLPEQTR SEALDDIQMA HNAGATHISW YQLTIEPNTV FYRSQPVLPD
EDRLADIEEA GQILLQNLGY HNYEVSAWSG AADKPCRHNV NYWQFGDYLA IGAGAHGKVT
VREGVIDNKV SHEMTANILI NDEENKQAGI YRFSKSRMPK DYMEYQEAHQ PDRALTPAPK
MIGWQAIDQD ELISEFMLNA LRLHDGVTWS LFETRTGLSY DSVTIQVTQL IEQGLLTDSL
EQLQPTELGK RYLNQILRAF L
|
|---|
| |