| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1194 |
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| Symbol | |
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| ID | 3514092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | - |
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| Start bp | 1430942 |
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| End bp | 1434148 |
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| Gene Length | 3207 bp |
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| Protein Length | 1068 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637669883 |
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| Product | autotransporter domain-containing protein |
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| Protein accession | YP_264479 |
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| Protein GI | 71065752 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.170523 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCATG TTTATCGTGT TGTTTTTAAC CGTTCTCTAG GTGTCTATCA ATGTGTATCT
GAACTTGCCA AAACTTGTGG CAAATCTTCT GGGAAATCAT CAAAAACCGC CGCAAAAAAT
GGCTTTACTT TACGTGCGTT ATCAACTGCT CTATTTAGCG TACTCGGACT GAGTATAGCC
AGTGTGACTC ATGCCACTAC CTATGACAAT GGCGCAGTAA ACATTGTGGA TAATGGGTAT
ACTATCGTTG ACGATATCGT AAAAAATGAT GGCACCATTC TGAAGAATAA TGATGTGAAT
ACCTATAATT ATATGCAGAT GAATGGTGAT CAAGAGTTAC CTTCACGTCT TCTTATTACA
GACAAAGGAG CAGTGCAGAC TAACCAGTTC ATTATCTATA ACAATGCATT AGTAGATATT
GAAGCTGGAG GACGTTTAGA AGCTAACTCT ATATATACGA GTAACTACTA CGGCCCAAAT
AATCAACAAA TAGCTAGTGA TACTAAAATT AATGTCAATG GTTCAGGTTC ATTACTGAAG
GCACAAGATT GGCTCTCGAT TCGTTCTCAA AATTCAGAAA CCACGCTTAC TGTAGAAAAT
GGTGGCACAG TCGAAGCCAA CTATCTAAAT ATATATTCAT ATAGCTATTT TGATGAAAAC
AATCAATTAA CACCTGCTGA TACCAGTGTC AACGTTGATG GTTCAGGTTC ATTACTGAAG
GCACAAGGTT GGCTCTCGAT TGGTTCTCGA AATTCAGAAA CCACGCTTAC TGTAGAAAAT
GGTGGCACAG TCGAAGCCAA CTATCTAGAT ATATATTCAT ATAATTATTA CAATCAAGAT
AATCAACCAA TAACAACTAG CAAGACTAAT GTCAACATTG ATGGTTCAGG CTCATCCCTG
AAGGTTCAAG AAGATGTGCG TATTTCCTCT GAAAATTCAG GAACAAGTAC ACTGACCGTA
AAAAATGGTG GCACAGCCGA AGCAAACTCT CTAGGTATAT ACTCATATGG TTATTATTAT
CAAGATAATC AGCCAATAAC AACTGGCGAG ACTAGTGTCA ACGTTGATGG TTTAAGTTCA
TCCCTAAAAA TTCAAGAAGA TGTGCGTATT AGCTCTCGAA ATTCAGGGAC GAGTACACTT
ACTATAGAAA ATGGCGGTAC GGCCGAAGCA AACAATCTAT ATATAGGCTC GGATGACTAT
AACAACTCTA CCAGCACTGC TAGTAAGAGT GTCGTGAACG TCAGTGGTAA TGGCTCATCA
CTAACTGTAA ACAATCTATA CGCTGGTATA GGAGGTAAAG GTCAAGTTGA TGTTACCGAT
CAAGGCACAC TAGAAGTGAC TCGTCAGTTG CAGCTCGGTG GCTCTGATAC TGAAGGCGCA
AACGCAGTAG GTGAATTGAC AGTAGATAAT GCTACTTTGA TTGCGCCCGC TACTGTCGTA
GGTGCTTTTG GCAGCGGTAC ATTAAATATT GTTAATAATG GTGTCATAAA GACTCAAAGT
ATCGAAAGAT TTGAGAACTC TGCAAAATCG GAAGTCAACT TTGATAACGG TACATTAAAA
TTAACAGGAT CTCAGCCAGA ATTATTCAGA AACTTCACGG GTGACAACCT CATTAATTTA
GGTGCGGGCG GCGGTACGAT TGATACTGCT GGATTTAGCG CGGGCTTATT TGAAGACACC
ACTCTAGCAG GTAATGGCGC AGTCATTACA GGTACTGGAG ACTTCACCAA GACAGGTACT
GGCTCTCTTA CTATGGCCAC TACTGCCAAA CAGTGGACAG GTGCTACTAA CGTTAAGCAA
GGTACACTGC GCCTCGATGG CGACTACACC ATGCGTGATG GTGAAATACT AGGTATTGGC
CTAAATAGCC TTGATGACTA TGGTCAGCTT GTCGTGAATG GTAGTGCTGA TATCACAGAG
GGTCAACTCA ATGTCAATGC CTCAGAGGCT GTACAGAGGC TAAATGGTGC GACCGTTTGG
AATGATATCG TAAGAACAAG CAATCTTATT GGTAATTTCG AAAGCGTTAC TGATAACAGT
CAGTTAGTTG GTTTTGTAGC AGACTATAGC ACTCCTAATG CTGTCAACCT AATAATGGTG
CGCCAAGACA AATTCGTTGA CACTATTCAG AACCAAGCCA ATCGTACAGG ACTCAGTCTT
GCTGGCGTTC TAGATCGGAG TATTGATATT CGATTAGCCA ATAATACTAA TGAGCTTGCC
GATGCTCTCA TTAGTAGTAC TATAGGTTTC AATCAATCTC AGATTGCTGC TGCTGTTAAT
GAGCTACAAC CCTTACTCAT GGGTGCTAGC AATCGTATAA TTACTGATGC CAACATCGTT
ATTAGCAATG CCATTACTGA GCATAGCTTG AGCTCTTCTA AGCGTGGACT TTGGGCACAA
GCGCTTGGTA GCAACATTAA TCACGAAGAA GAAAATGGTA CTACAGGTTA TGATGCTGAT
AGCTATGGTG GCATCGTTGG TATTGACACC CCGATTAACA GTAATTTAAA TCTTGGTATG
GCTGTCTCTT ATAACGACAG TGATGTTGAT AGTGATAGTC AAAACCTAAA CCATAAAATG
AGCGCAAAAA GTTGGCAGGT ACTTGGTTAT GGTAACTATG CCGTTAGTGA TGCTACTCAG
GTTAATTTCC ATGCTGGGGC AGGTAGAAGT AATATCGAAG GCGAGCGTTA CTTGAGCATT
CTAACAGATG CTGTTGCTCA GTCTGATTAT GATGTAGATA CTCTTCAAGC GGGATTTGGT
ATTGGTCATC GAATTGGAAC AGAAAATCGC AATATTACAC CATTTGCACA AGTTAATTAT
GCCCAAGCAA AAAGTGATAG CTATCGTGAA ACAGGTGCTG GGGTCTATAA CTTCGAAGTT
GATGAAAACA CCTATGAATC TATGCGTTGG ACAGCAGGTA TAAAAATGTC GCAAGCATTA
ACACCGAAAA TAGCGCTTAC TGGTCAGCTG GCTGCCGCTA TTGAGAATGG TGATCAACGC
TCCGATATTA CAGCAAGCTT TATCAGTATG CCAGAAGACA AGTTTACTAC TGTCGGACAA
GAAGTAGGTC AGGAGATAGG CATTGCTGGT ATCGGTATAC GTTATATGCC AACAGCTAAT
ACAACCCTCT CAGCAGGTTA TCGTGGTGAG TGGCGAGATA ACTATGATGA TCAAGGTGCA
AACGTTGCAT TGCAGATAAC GTTTTAA
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| Protein sequence | MNHVYRVVFN RSLGVYQCVS ELAKTCGKSS GKSSKTAAKN GFTLRALSTA LFSVLGLSIA
SVTHATTYDN GAVNIVDNGY TIVDDIVKND GTILKNNDVN TYNYMQMNGD QELPSRLLIT
DKGAVQTNQF IIYNNALVDI EAGGRLEANS IYTSNYYGPN NQQIASDTKI NVNGSGSLLK
AQDWLSIRSQ NSETTLTVEN GGTVEANYLN IYSYSYFDEN NQLTPADTSV NVDGSGSLLK
AQGWLSIGSR NSETTLTVEN GGTVEANYLD IYSYNYYNQD NQPITTSKTN VNIDGSGSSL
KVQEDVRISS ENSGTSTLTV KNGGTAEANS LGIYSYGYYY QDNQPITTGE TSVNVDGLSS
SLKIQEDVRI SSRNSGTSTL TIENGGTAEA NNLYIGSDDY NNSTSTASKS VVNVSGNGSS
LTVNNLYAGI GGKGQVDVTD QGTLEVTRQL QLGGSDTEGA NAVGELTVDN ATLIAPATVV
GAFGSGTLNI VNNGVIKTQS IERFENSAKS EVNFDNGTLK LTGSQPELFR NFTGDNLINL
GAGGGTIDTA GFSAGLFEDT TLAGNGAVIT GTGDFTKTGT GSLTMATTAK QWTGATNVKQ
GTLRLDGDYT MRDGEILGIG LNSLDDYGQL VVNGSADITE GQLNVNASEA VQRLNGATVW
NDIVRTSNLI GNFESVTDNS QLVGFVADYS TPNAVNLIMV RQDKFVDTIQ NQANRTGLSL
AGVLDRSIDI RLANNTNELA DALISSTIGF NQSQIAAAVN ELQPLLMGAS NRIITDANIV
ISNAITEHSL SSSKRGLWAQ ALGSNINHEE ENGTTGYDAD SYGGIVGIDT PINSNLNLGM
AVSYNDSDVD SDSQNLNHKM SAKSWQVLGY GNYAVSDATQ VNFHAGAGRS NIEGERYLSI
LTDAVAQSDY DVDTLQAGFG IGHRIGTENR NITPFAQVNY AQAKSDSYRE TGAGVYNFEV
DENTYESMRW TAGIKMSQAL TPKIALTGQL AAAIENGDQR SDITASFISM PEDKFTTVGQ
EVGQEIGIAG IGIRYMPTAN TTLSAGYRGE WRDNYDDQGA NVALQITF
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