| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1111 |
|---|
| Symbol | prpC |
|---|
| ID | 3514809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 1322815 |
|---|
| End bp | 1323954 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637669799 |
|---|
| Product | methylcitrate synthase |
|---|
| Protein accession | YP_264396 |
|---|
| Protein GI | 71065669 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0372] Citrate synthase |
|---|
| TIGRFAM ID | [TIGR01800] 2-methylcitrate synthase/citrate synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.468935 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCAC AAAACCAATC AACAAAAGTA TTGTCAGGCG CAGGTCTTCG TGGTCAAGTG
GCAGGTAAGA CAGCTTTGTC TACCGTTGGC AAATCAGGCT CTGGTCTGAC CTATCGCGGT
TATGACGTCT CAGAGCTTGC GGACAAATGC ATCTTTGAAG AAGTGGCTTA TCTATTGTTA
TATGGTAACT TGCCGACCCA AAGTGAGCTT GATGCTTATC AGACCAAACT AAAAGGCTTA
CGTGGTTTGC CACAGTCATT AAAAGAAGTG CTTGAGCGTA TCCCTGCCGC AGCGCACCCA
ATGGACGTAT TACGTACCGG TTGCTCAATG CTCGGTAACT TAGAAACTGA AATCAGCTTT
GATGAAGAAA ACGACCAAGC GGATCGTATG CTTGCGGCAT TCCCATCAAT CATTAACTAT
TGGTACCGCT TTAGCCATGA CAATGTGCGT ATCGAAACCG AGACCGATGA TGAGACCATT
GGTGGTCACT TCTTGCATCT GCTTAAAGGT GAAAAGCCAA ACGAGCTACA TACTAAAGTG
ATGAATGTCT CGCTCATTCT TTACGCTGAG CATGAGTTTA ATGCGTCAAC CTTTACCGCT
CGCGTGTGTG CATCTACCTT GTCTGACATC CATTCTTGTA TCACTGGCGC GATTGGTTCA
TTACGCGGTC ATCTACATGG CGGCGCGAAC GAAGCTGCTA TGGATATGAT TGAAGGCTTT
AGCTCACCAG ATGAAGCAGA ATCTGAGATG ATGGCCATGC TGGCACGTAA AGATAAGATT
ATGGGCTTTG GTCATGCCAT CTATAGTGAA TCTGATCCAC GTAACGTGGT TATCAAGGGT
TGGGCTGAAA AGCTGGCTGC TGATGTGGGT GATGATGTGC TTTATCCAGT ATCAGTACGT
TGTGAAGAAG TCATGTGGCG CGAAAAGAAA CTATTCTGTA ATGCTGATTT CTTCCATGCA
TCAGCGTATC ACTTCATGGG TATTCCAACT AAGTTATTCA CACCAATCTT TGTATGCTCG
CGTTTAACCG GCTGGGCGGC ACACGTGTTT GAGCAACGTG CTAATAACCG TATCATTCGC
CCAAGTGCAG AATATACTGG CGAAGAATTG CGCCCAGTAC CAGATATGAG CGCGCGTTAA
|
|---|
| Protein sequence | MAAQNQSTKV LSGAGLRGQV AGKTALSTVG KSGSGLTYRG YDVSELADKC IFEEVAYLLL
YGNLPTQSEL DAYQTKLKGL RGLPQSLKEV LERIPAAAHP MDVLRTGCSM LGNLETEISF
DEENDQADRM LAAFPSIINY WYRFSHDNVR IETETDDETI GGHFLHLLKG EKPNELHTKV
MNVSLILYAE HEFNASTFTA RVCASTLSDI HSCITGAIGS LRGHLHGGAN EAAMDMIEGF
SSPDEAESEM MAMLARKDKI MGFGHAIYSE SDPRNVVIKG WAEKLAADVG DDVLYPVSVR
CEEVMWREKK LFCNADFFHA SAYHFMGIPT KLFTPIFVCS RLTGWAAHVF EQRANNRIIR
PSAEYTGEEL RPVPDMSAR
|
|---|
| |