Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyc_0782 |
Symbol | lolD |
ID | 3514630 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter arcticus 273-4 |
Kingdom | Bacteria |
Replicon accession | NC_007204 |
Strand | + |
Start bp | 934537 |
End bp | 935217 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637669469 |
Product | ABC lipoprotein exporter, ATPase subunit, LolD |
Protein accession | YP_264069 |
Protein GI | 71065342 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.000690329 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGCTA TCTTAAAAGC GACCAATATT AATAAGATAT ACGATGAAGG CGCCGTGAGT ACCCAAGTTT TGACTGGTTT GGATTTGACT GTCAATGCCG GTGAGCGTAT TGCTATCGTT GGCACCAGTG GGTCAGGAAA GAGTACCTTG CTTCATCTGC TTGGTGGGCT TGATACGCCA ACCAGTGGTG AGGTTTGGTT GCATGGTCAG TTATTAAACA GTATGAATGA GACCGAACGC GGTGCGATGC GTAATAAGCA TTTGGGATTT ATTTATCAGT TCCATCATCT GTTGGCTGAA TTTACTGCCG TTGAAAACGT TGCCATGCCA TTATTGATGC GCTCAGAAGT ATCGACGGCT GAAGCGCGTC AACAAGCCAT CGATATTTTA AACAGTGTTG GTCTTGAGCA TCGTTTGGCA CATAGACCTG GTGAGCTGTC AGGTGGTGAG CGTCAGCGTG TGGCGATTGC GCGTGCTTTG GTCACTAAGC CGTCGCTTAT TTTGGCAGAT GAGCCAACGG GTAACCTAGA TTATGACAAT GCGCAAAGCG TGTTTGGATT ATTATCAGAG CTACAAAGCA CCATGCAAAC AGCACTATTG ATGGTCACCC ATGATCGCAA TCTAGCAGCG CTTGCTGATC GTCAGCTGTT ATTACGCAAT GGTCATTGGG AAAATTATTA A
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Protein sequence | MSAILKATNI NKIYDEGAVS TQVLTGLDLT VNAGERIAIV GTSGSGKSTL LHLLGGLDTP TSGEVWLHGQ LLNSMNETER GAMRNKHLGF IYQFHHLLAE FTAVENVAMP LLMRSEVSTA EARQQAIDIL NSVGLEHRLA HRPGELSGGE RQRVAIARAL VTKPSLILAD EPTGNLDYDN AQSVFGLLSE LQSTMQTALL MVTHDRNLAA LADRQLLLRN GHWENY
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