| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0781 |
|---|
| Symbol | lolE |
|---|
| ID | 3514629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 933257 |
|---|
| End bp | 934492 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637669468 |
|---|
| Product | ABC lipoprotein exporter, inner membrane subunit, LolE |
|---|
| Protein accession | YP_264068 |
|---|
| Protein GI | 71065341 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000206341 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGTC CTTTAGCGTT ATTTATCGGC TTACGGTACA CCCGAGCAGA ACGTAGTAAT
GGTTTTATCT CTTTTATATC GCTGATCTCA ATGATTGGTC TGACGCTTGG CGTGGCGGTA
TTGATTACGG TGCTGTCGGT CATGAACGGC TTTGATCGTG AGCTAAAGAC TCGTATTTTG
GGTATGGTGC CGCAAGCGAC CGTCACATCA ACCGAGATTA TCGGTGATTG GAAACAACTC
GCGGACAAAA TTAAAGAAGA TCCAGAAGTG GTTGCGGTTG CGCCTTTTAT CCAGTTGCAA
GGTATGTTGA CGTCAAATGG TCAGGTAGCC GGTATCATGG TGACAGGTGT TGATCCTGAG
TATGAGAAAA ACGTTTCAAT CATCAATGAG CATATGGTGG AAGGCAATAT TGATACGCTA
AAAAATGGCG AGTTTGGTAT TGTGCTTGGT GAAGGTATGG TGCAATCACT AGGACTGCAA
TTGGGCGACA AAGTCACTCT AGTGCTGCCA GAAGCGTCGC CCTCACCTGC TGGCGTGATA
CCACGCTTTA AGCGCTTTAC CTTGACCGGT ATATTCTCTA TCAGTCCAGA AGTCGACAGT
CTCATGGCAT TTATTCCAAT GGGCGACGCC GCCAAGCTAT TACGTTTACC AGAGGGCGCG
CAAGGTATCC GTATGAAGCT TAATGATATC TTTACAGCGC CAATGGCGGC GCAAAAAGCG
GCTGCGATAG CGCCTGAGCA ATTATATCCT AGTGATTGGA CCCAAACGCA TGGCAACTTA
TTTGGTGCCA TCCAAATGGA AAAAGCCATG GTAGGATTGC TGCTGTTCTT AATCATACTC
GTGGCAGCTT TTAATATTGT CTCAAGTTTG GTCATGTTGG TGACTGATAA AAAAGCGGAT
ATTGCTATTT TAAAAACCTT TGGTGCCTCA CCGCGTCTGA TTACTCAAGT CTTCATGGTG
CAAGGTGTGG TCATCGGTTT TATTGGTACG ATTGCAGGGA CGATATTGGG CGTGATATTT
GCATTGACGG TCAGTGATAT TTTAGGCTTT ATCAATCAAA GCTTTGATCT AAATTTATTT
GATGCCTATT TTGTGAACTA TTTGCCATCG CAGCTACGTT TGGTAGATGT GGTACTGATT
ACCAGTGCGT CATTTGTGTT GAGCTTTTTG GCAACCGTTT ATCCAGCACG CCGAGCGGCT
AAAATTCAGC CTGCACAAAC GCTGCGTTAC GAGTAA
|
|---|
| Protein sequence | MFRPLALFIG LRYTRAERSN GFISFISLIS MIGLTLGVAV LITVLSVMNG FDRELKTRIL
GMVPQATVTS TEIIGDWKQL ADKIKEDPEV VAVAPFIQLQ GMLTSNGQVA GIMVTGVDPE
YEKNVSIINE HMVEGNIDTL KNGEFGIVLG EGMVQSLGLQ LGDKVTLVLP EASPSPAGVI
PRFKRFTLTG IFSISPEVDS LMAFIPMGDA AKLLRLPEGA QGIRMKLNDI FTAPMAAQKA
AAIAPEQLYP SDWTQTHGNL FGAIQMEKAM VGLLLFLIIL VAAFNIVSSL VMLVTDKKAD
IAILKTFGAS PRLITQVFMV QGVVIGFIGT IAGTILGVIF ALTVSDILGF INQSFDLNLF
DAYFVNYLPS QLRLVDVVLI TSASFVLSFL ATVYPARRAA KIQPAQTLRY E
|
|---|
| |