| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0680 |
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| Symbol | pilF |
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| ID | 3516140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 808500 |
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| End bp | 809447 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637669370 |
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| Product | type 4 fimbrial biogenesis protein |
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| Protein accession | YP_263973 |
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| Protein GI | 71065246 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.000581719 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGGCGA CCATAATGAC TTCTAAAAAT TCTTGTCAGT TCAAATATCA AACCTCTCTT
TCTCATTCAG TGAGGCAGTT GGGCGCTACC GTTTTTGTTA GAAAAAGTGC TCAAGGTATA
TGGCTTGCCA GCACGTTAAG CGCTTTATTG ATTTCTGGTT GTCAAAGCAC GCCAACCAAT
GATTTAATAA CGGGCACGCT TTATCAAACC TCAACGCAAC CCAATGACAA TCGTCAATTG
GATCAGCAAG AAATTGCTCG CGTTCGAACG ACACTTGCTG CACAATATAT CCGCAAAAAC
GAGCTCGATG CTGCCCAAAG ACAGCTCGAA AAAGCCTTTG CTGCCGATAG CCGTCATGCG
CCGGCCTATG ATATGATGGG TGTTTTGTTG CAGCAAGAGG GTAGCCGCCT TAATCTTGAA
AAAGCCGAAC AATTTTTTAA AAAAGCCATT GTGCTTGATA AAGATTTTGA TCAAGCACAC
AACAATTATG GCGTGTATTT GTCGCAGATG AAGCGTTACA AAGAGGCAGC AGAGCAGTTC
GAAATAGCAG GCGCTGCCCT TGGCTATGAA GGCCGTATTG GTGCGTTAGA AAACTTAGGT
CGTACCTACC TTCAACTAAA GGATCATCCT GCCGCGGAAA AGGCTTTTTT ACGGGCTTTA
GATGGCAATC GAAACAGCAT CATTGCGCAT ATTGAGATGG TTGACTTACT ACTTGAGCAG
CAGCGTTTTC AGCAAGCACA AAGACTCTAT GATGAGACCT TGATATTGCT GCAAGGGCAG
GGCGTTAGTC CACGCTTGCT ACTACAAGGT ATCAAATTGG CGGCAGCGCA AAAAAACATC
GAGACACGCC AACAATTGGC ACAGCAACTT TTATCCGCTT ATCCATTAAG TGATGAAGCA
AAACAACTAA AGACTTGGCT TAACAATCCA GAGGCACCAT GGAAATGA
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| Protein sequence | MMATIMTSKN SCQFKYQTSL SHSVRQLGAT VFVRKSAQGI WLASTLSALL ISGCQSTPTN
DLITGTLYQT STQPNDNRQL DQQEIARVRT TLAAQYIRKN ELDAAQRQLE KAFAADSRHA
PAYDMMGVLL QQEGSRLNLE KAEQFFKKAI VLDKDFDQAH NNYGVYLSQM KRYKEAAEQF
EIAGAALGYE GRIGALENLG RTYLQLKDHP AAEKAFLRAL DGNRNSIIAH IEMVDLLLEQ
QRFQQAQRLY DETLILLQGQ GVSPRLLLQG IKLAAAQKNI ETRQQLAQQL LSAYPLSDEA
KQLKTWLNNP EAPWK
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