Gene Psyc_0548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_0548 
Symbol 
ID3513975 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp642397 
End bp643974 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content40% 
IMG OID637669233 
ProducttRNA-processing RNAse BN 
Protein accessionYP_263843 
Protein GI71065116 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCGTTA TGGAAAATCT ATTAAAAAAA ATACCTTTTT TACACCAACG TTGGTTTCAG 
TTCTTACGTT TTTTGACACG GCACTTTTTT GAGGATAATT GTCAGCAAAA AGCTGCATCA
CTGACCTATA CGACTTTGTT GTCGATTGTG CCTATCTTAA CCGTACTGTT GATGATTTTG
TCTTCAGTAC CAGCACTTGC TTCTGTTAGA GCGCAGATTT ATGAAGTCAT TTATAGCAAC
TTGCTGCCAC AATCGAGCTT ACAAGTCAGT AAATACATCA ATAATTTTGC TGAAAAATCA
TCAAACCTAA CTATCATCGG GGCGATGTTC TTACTTTTTA CTACCATCAT GACTTTGACC
ACCATTGAGC GCGCTTTTAA CCAAATATGG CGCGTAGAAG ATCGTTCTGG CGGTATGAGA
AGTATGCTGC GCTATTGGAC CATCGTCACG TTGGGACCCT TGGTATTGGG TACGGCATTT
ATCGCCTCAA GTGCTGTACA AAGCCTGAAT TTGTTAAATA GGCAAATTGG CGGCTATGGT
ATTGACTGGT CGTTTTGGGT ACAGATAGTG TCGATTGCTG TTACGATCGC TGGTTTCATC
AGTATGTATT GGTTTATTCC AAAAGCGCGA GTACCGGCAA AAAACGCCGC GATTGCGGGT
GTTTTTGTGG CGATTGTCTT TGAGCTGATG AAGCACTTAT TTGGTACAGT GATGGCAAAT
TTTACCAGTT ATGAGGCGAT TTATGGCGCA TTTGCGGCGC TGCCGATTTT CTTATTATGG
ATATATCTGT CATGGAATCT AATTTTATTA GGAGTTGAGA TTAGCTATAC CTTAACCATA
TTTGAGACAG AAGAGGTCTA TCCGCGCCAT CCGTTTTTAA GCTTGCTTGA TATGTTAAAC
CTAGTTTATA CCTATCATTT AAAAGGCGAA GCGGTGAGCG AGCAAGCGCT ACGCAATGTT
CTTGGACGTA AGGAGCTGCC AAAATGGTAT ACCTATATCA ACTACCTGCA AGACAGCAAC
TTGATTACCA TGACAGAAGA TGAGCACTAC GTACTCAAAA GAGATTTGAG CAAAATAACC
TTGTGGGATT TTTATCGTAC CCTGCCTTAT CCATTGCCTA TCAAAGATGA GCTTGATGAG
ATGAGCCTAA AAGACCAAAA ACCTTGGCTT AGCTTATTGG TCAATCGCTT TGAAAATACC
GAAGCCTATG CCAAAGCACA ATTGAATGTG CCACTCGGTG CTATTTTTGC TCATAGTGAA
CCACGCAAAA AATCTGCTAA TGACAAATCG ACTAATCATA AAAATGAAAA GCTTCAGAAA
GAGAAAAATG AATTCTTTAG AAAATCTAGC GCGGCTACCT CCAGTTATTT ATTACAAGAG
CCTCTAGATA ATAAGGATGA TATACCGAAG TTTGAACCGG TCGCCTATGA CAAGGATAGC
GACATAGAAC GTGATGAACA TAATCGTGAA ATTCTTATTC CACAAGACAG CGATGATGAT
AAAAACCAAG TAGACGCTAA TCACTTCAAT GCTAAAGGCG ATATTATTAC AGAAGCTGAT
AATCCAAGCT CGATTTGA
 
Protein sequence
MVVMENLLKK IPFLHQRWFQ FLRFLTRHFF EDNCQQKAAS LTYTTLLSIV PILTVLLMIL 
SSVPALASVR AQIYEVIYSN LLPQSSLQVS KYINNFAEKS SNLTIIGAMF LLFTTIMTLT
TIERAFNQIW RVEDRSGGMR SMLRYWTIVT LGPLVLGTAF IASSAVQSLN LLNRQIGGYG
IDWSFWVQIV SIAVTIAGFI SMYWFIPKAR VPAKNAAIAG VFVAIVFELM KHLFGTVMAN
FTSYEAIYGA FAALPIFLLW IYLSWNLILL GVEISYTLTI FETEEVYPRH PFLSLLDMLN
LVYTYHLKGE AVSEQALRNV LGRKELPKWY TYINYLQDSN LITMTEDEHY VLKRDLSKIT
LWDFYRTLPY PLPIKDELDE MSLKDQKPWL SLLVNRFENT EAYAKAQLNV PLGAIFAHSE
PRKKSANDKS TNHKNEKLQK EKNEFFRKSS AATSSYLLQE PLDNKDDIPK FEPVAYDKDS
DIERDEHNRE ILIPQDSDDD KNQVDANHFN AKGDIITEAD NPSSI