Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyc_0344 |
Symbol | rumA |
ID | 3515061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter arcticus 273-4 |
Kingdom | Bacteria |
Replicon accession | NC_007204 |
Strand | - |
Start bp | 426591 |
End bp | 428129 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637669031 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_263647 |
Protein GI | 71064920 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.660641 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCCA CCGATTCAAA GACATCTACC TCAGATACGA CCGAGCAGCC AAATGAGACT CAAACGATTA CGATTCCGCC TAGTAAGAAA AAATCTAAGC CTTCGTCAAA GACGCGTCGT CGTCTAAAAG ATGCTGAACC ACTACCCTTT GCTATCGATG GCTTGTCACA TGATGGTCGC GGCGTTGCCG TATACGGTAA TGGGTTTGTG GAAGCCGATG GCCATATCAC AGACAAACAT GGCAAAAAAA TCTTTGTCAG CTTTGCCTTG CCGGGTGAAA GCGCGTTGGT CAAAATTACC AATAGCCGTA CCAGCTTTGA AGAAGGCGAT GCCGTGAACA TCACCGCCAA TCCAAATCCT GAGCGCGTTG TACCTCCCTG CCCGCATTTT GGTGTTTGCG GCGGCTGTAA TCTGCAACAT TGGCAGCCAG AGGCACAAAT TAACTTTAAG CAATCTGTCC TTGCTGAGAT GCTAGTGCAT CAAGCCAATG TGGCACCCGA TCACTGGCTT GAACCAGTGG TTGGTGATCG TCTTGGCTAC CGTACCAAAG CGCGACTGGG TGTGCGTTAT GTTGCCAAAA AAGAAACTGC CTTGGTTGGC TTTCGTGAGC GCTCAAGTAA CTTTTTGGCG GAGTTAAATG AATGTCATAT TTTAGATCCA CGTATCGGCT TTGAAATTGA AAACTTAAAA ACCCTTATTA GCACTTTAGA GAGCCGTAAT AAGATTGCTC AGCTTGAATT GGCGATGGGC GAGTATTTGC CAGAGTTGCC TGATGGCGAT CAACCAGTCG CGCTGATTGT GCGTAATCTT GAGCCATTGT CAGATGCTGA TATTGATAAG CTCAAGGTCT TTTTTGCGGC ACGCAATTGG CAGTTATACT TGCAACCAAA GGGTGCGGAT AGCATCCAGC GTATTGCCTT AACGGCTGCA GATGATTTAA GTGAGCAATT TGGACGTTTG TATTATCAAT TGCCAGAGTA TGATTTGACG TTTGAGTTTA TCCCTACCGA TTTTACCCAA GTCAATCTGT CGGTAAACCG TCAGATGACC AAGCTTGCTT GTGATTTGCT TGATTTAAAA GCGGGCGAGC GCGTTCTAGA TTTATTTAGC GGTTTGGGCA ACTTTAGCTT ACCACTAGCA CGATTGGTTG GTGAAACTGG CTCAGTTGTT GGTGTTGAAG GTAGTGAAGC CATGACTATA CGCGCCGCTG ACAATGCGCG CCGCAATGGT ATTAATAACA CCGAGTTTTA TAGCCAGGAT TTGACGCACG ACTGTACGGA TAAACCGTGG GCCAACCAAG GTTTTGATGC GCTGCTTATC GATCCACCAC GTTCTGGCGC TTGGGAGATT ATGCAATATT TACCTAAGTT TAATGCTGAG CGAATTGTCT ATGTTTCCTG TAATCCTGCG ACGCTTGCTC GTGATACCAA AGCACTACTC GAACAAGGCT ATCGTTTAAC GCATGCTGGC GTGATGGATA TGTTTTGTCA TACTGGTCAC GTTGAGTCAA TTGCACGCTT TGAAAAAGTC TCTGCTTAA
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Protein sequence | MQPTDSKTST SDTTEQPNET QTITIPPSKK KSKPSSKTRR RLKDAEPLPF AIDGLSHDGR GVAVYGNGFV EADGHITDKH GKKIFVSFAL PGESALVKIT NSRTSFEEGD AVNITANPNP ERVVPPCPHF GVCGGCNLQH WQPEAQINFK QSVLAEMLVH QANVAPDHWL EPVVGDRLGY RTKARLGVRY VAKKETALVG FRERSSNFLA ELNECHILDP RIGFEIENLK TLISTLESRN KIAQLELAMG EYLPELPDGD QPVALIVRNL EPLSDADIDK LKVFFAARNW QLYLQPKGAD SIQRIALTAA DDLSEQFGRL YYQLPEYDLT FEFIPTDFTQ VNLSVNRQMT KLACDLLDLK AGERVLDLFS GLGNFSLPLA RLVGETGSVV GVEGSEAMTI RAADNARRNG INNTEFYSQD LTHDCTDKPW ANQGFDALLI DPPRSGAWEI MQYLPKFNAE RIVYVSCNPA TLARDTKALL EQGYRLTHAG VMDMFCHTGH VESIARFEKV SA
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