Gene Psyc_0344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_0344 
SymbolrumA 
ID3515061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp426591 
End bp428129 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content46% 
IMG OID637669031 
Product23S rRNA 5-methyluridine methyltransferase 
Protein accessionYP_263647 
Protein GI71064920 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.660641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCCA CCGATTCAAA GACATCTACC TCAGATACGA CCGAGCAGCC AAATGAGACT 
CAAACGATTA CGATTCCGCC TAGTAAGAAA AAATCTAAGC CTTCGTCAAA GACGCGTCGT
CGTCTAAAAG ATGCTGAACC ACTACCCTTT GCTATCGATG GCTTGTCACA TGATGGTCGC
GGCGTTGCCG TATACGGTAA TGGGTTTGTG GAAGCCGATG GCCATATCAC AGACAAACAT
GGCAAAAAAA TCTTTGTCAG CTTTGCCTTG CCGGGTGAAA GCGCGTTGGT CAAAATTACC
AATAGCCGTA CCAGCTTTGA AGAAGGCGAT GCCGTGAACA TCACCGCCAA TCCAAATCCT
GAGCGCGTTG TACCTCCCTG CCCGCATTTT GGTGTTTGCG GCGGCTGTAA TCTGCAACAT
TGGCAGCCAG AGGCACAAAT TAACTTTAAG CAATCTGTCC TTGCTGAGAT GCTAGTGCAT
CAAGCCAATG TGGCACCCGA TCACTGGCTT GAACCAGTGG TTGGTGATCG TCTTGGCTAC
CGTACCAAAG CGCGACTGGG TGTGCGTTAT GTTGCCAAAA AAGAAACTGC CTTGGTTGGC
TTTCGTGAGC GCTCAAGTAA CTTTTTGGCG GAGTTAAATG AATGTCATAT TTTAGATCCA
CGTATCGGCT TTGAAATTGA AAACTTAAAA ACCCTTATTA GCACTTTAGA GAGCCGTAAT
AAGATTGCTC AGCTTGAATT GGCGATGGGC GAGTATTTGC CAGAGTTGCC TGATGGCGAT
CAACCAGTCG CGCTGATTGT GCGTAATCTT GAGCCATTGT CAGATGCTGA TATTGATAAG
CTCAAGGTCT TTTTTGCGGC ACGCAATTGG CAGTTATACT TGCAACCAAA GGGTGCGGAT
AGCATCCAGC GTATTGCCTT AACGGCTGCA GATGATTTAA GTGAGCAATT TGGACGTTTG
TATTATCAAT TGCCAGAGTA TGATTTGACG TTTGAGTTTA TCCCTACCGA TTTTACCCAA
GTCAATCTGT CGGTAAACCG TCAGATGACC AAGCTTGCTT GTGATTTGCT TGATTTAAAA
GCGGGCGAGC GCGTTCTAGA TTTATTTAGC GGTTTGGGCA ACTTTAGCTT ACCACTAGCA
CGATTGGTTG GTGAAACTGG CTCAGTTGTT GGTGTTGAAG GTAGTGAAGC CATGACTATA
CGCGCCGCTG ACAATGCGCG CCGCAATGGT ATTAATAACA CCGAGTTTTA TAGCCAGGAT
TTGACGCACG ACTGTACGGA TAAACCGTGG GCCAACCAAG GTTTTGATGC GCTGCTTATC
GATCCACCAC GTTCTGGCGC TTGGGAGATT ATGCAATATT TACCTAAGTT TAATGCTGAG
CGAATTGTCT ATGTTTCCTG TAATCCTGCG ACGCTTGCTC GTGATACCAA AGCACTACTC
GAACAAGGCT ATCGTTTAAC GCATGCTGGC GTGATGGATA TGTTTTGTCA TACTGGTCAC
GTTGAGTCAA TTGCACGCTT TGAAAAAGTC TCTGCTTAA
 
Protein sequence
MQPTDSKTST SDTTEQPNET QTITIPPSKK KSKPSSKTRR RLKDAEPLPF AIDGLSHDGR 
GVAVYGNGFV EADGHITDKH GKKIFVSFAL PGESALVKIT NSRTSFEEGD AVNITANPNP
ERVVPPCPHF GVCGGCNLQH WQPEAQINFK QSVLAEMLVH QANVAPDHWL EPVVGDRLGY
RTKARLGVRY VAKKETALVG FRERSSNFLA ELNECHILDP RIGFEIENLK TLISTLESRN
KIAQLELAMG EYLPELPDGD QPVALIVRNL EPLSDADIDK LKVFFAARNW QLYLQPKGAD
SIQRIALTAA DDLSEQFGRL YYQLPEYDLT FEFIPTDFTQ VNLSVNRQMT KLACDLLDLK
AGERVLDLFS GLGNFSLPLA RLVGETGSVV GVEGSEAMTI RAADNARRNG INNTEFYSQD
LTHDCTDKPW ANQGFDALLI DPPRSGAWEI MQYLPKFNAE RIVYVSCNPA TLARDTKALL
EQGYRLTHAG VMDMFCHTGH VESIARFEKV SA