Gene Psyc_0343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_0343 
SymbolrelA 
ID3515060 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp423686 
End bp426226 
Gene Length2541 bp 
Protein Length846 aa 
Translation table11 
GC content44% 
IMG OID637669030 
Productputative RelA/SpoT family protein 
Protein accessionYP_263646 
Protein GI71064919 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000094604 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAAAA TTCGTGAAGG ATTACCGCTG GTAGATGGAC AAACCACGCA AGCCGACAGC 
GCAACTTTGG CAGCGCAACT GGTCGCGAAT CAACGCTCGC ATCAGTCTGC CAATAGCTAT
GCTCAAATCC CACTAGATAT CAAGTATCAA CTTGCCACTC GTAAACTCCA TACCACCTTT
GATCGCTCTG TCAATTACGC ATATTACAGT CATGACTCAA ATCTTGAAAA TGACTATTTA
AGGGATAAAA TCCTTGATGA ATCCGAGGCG TTTTCACAAC AAGAGCTTGA AGCGTTAGAT
TTGGATCACA TCAATATTGA CGTACCCACT TGGCTTGACA ATGTTGCCAA GCGTATTGGG
CAAGATTCGG TACCCAATCT TAGCGCTGCC TGTGCGTTTA TACGTAAGCA CATGAATACC
AGTGCATCGG AGCGTTCGGG CGCTTACGTG ACTGGTATTG GCATGACTGA TATCTTAACC
TATCTCTATC AAGATGAAGA TGCCCTTGTC GCTGCCATGC TCTATCGCAG TGCGCGCCAA
TCGATTATTA GTCTTAACGA TATTGAAAAA AAGTTTGGCG CGGATATTTC AACCTTGGTT
AAAGATACTT TGGCGATGGG TCAATTGTCT GAGATTATTG AAAGTAATAA GCGCTTAGAA
GATCACTTTG TAAATAACCA ACGTGACCAG CTATCAAATA TTTATAGTAT GCTGATCTCA
GTCACCAACG ATGTCCGGGT GGTACTGATT AAGCTTTCTG AACGTACTTT TGCTATGCGC
GAGCTGACCT TTTCTAATGA AGATCGGCAA ACTCGTGTGG CGCGTGAGGT TATGACCATT
TACGCGCCGT TGGCACATCG CTTGGGTATT GCCCAGCTTA AATGGGAGCT TGAAGATTTA
GCGTTTCGTT ACCTTGCCCC TGACCGTTAT AAAGAGATTG CCAAGCTGTT GTCAGAAAAG
CGTAGCGAGC GTGAATCCTA TATTCAGCGC GTACAAGATA GGCTCAATGA GTCTTTGGCA
GAATCGGGTA TTGAGGGCGA AGTTTCAGGA CGTGTTAAGC ACATTTATTC TATTTATCGA
AAAATGAAGC TCAAAGGTTT ATCCTTTGAT CAGCTGTACG ATATCCGTGC GCTGCGCGTT
TTAGTGACCA CTCCTTCAGA CTGTTATCAT GTCCTTGGGC TGGTACACGG GTTGTGGCGT
TATATTCCTG AACAATTTGA CGATTATATT ACCAATCCAA AGTCTAATGG TTATCGTTCA
CTCCATACTG CAGTCATCGC TGAAAACAAA TCGCTTGAGG TGCAGATTCG TACTCAAGAG
ATGCATTTTG AAGCCGAGCT TGGCATGTGT GCCCATGTCA ATTACAAAGA AGGTCTAAAA
AATAAGAAGG ATAACTACCT TAACCAGCGA ATCAGTTCAT TACGTCAACT ACTGTCTATC
AATAATCAGC CGCGCTCATC CTTATCGACT GGTGACGAGT TAGAAGAAAC TGAGTTTGAT
GATGAAGAGC AGTTGGTTGA TTTTGATGAG CTCGAACGTA TTTACATCTT TAGTCGTGAT
GGTGATATTA CTGAGTTGCC AAAAGGCGCG ACTGTGTTAG ATTTTGCCTA TTATGTCCAT
ACGCAAGTCG GTAACCGCGC CCAAGCAGCA CGGGTTAATC AGCGTTATGT GCCGCTGACC
TATCAGCTCA AAACGGGCGA GCAAGTCGAG ATTATTACCA AATCTTCACG TGAGCCCAAT
CGCGATTGGC TGGTGGCTTC ACTGGGCTAT ATCCATACCA ACCGTGCCCG CTCAAAACTT
CGTCAATGGT TTAATAAACA AGACCGCGAT AAGAATATCG AGATCGGTCG TCAGATGCTA
AGTAAAGAGC TTGAACGCCT ATCGGTGCAC CCAAATAGCA TTGATTTAAA CGATTATACG
CAGCATTTTA ATGTTAATAA TACTGACGAT ATCGTGGTCG GTCTGGTAAC GGGTGAAATT
GGTCTAAATC AGCTCACCAG CCATATTTCT CGTCAATTGC ATCTAGAGCC TGAAAGATCT
GAAGAAGATT TTGCCCCTAC TATTGATAAA AGAGAATCAG GCAAGCTTGA TGCTTATAAA
ATTCAAATCG ATGGCTTAGA TAATATTGAG GTTGGTTTGG CAGGCTGCTG TCATCCTGTA
CACGGTGAGC CTATTGCAGG TTACATTACT TTATCGCGCG GTGTCAGTGT TCATAACCGT
GGTTGTCCTG AATATCTGCG CTTGATTGAA CGTGACCCTG AACGCGAAAT TAAGGCAGCT
TGGAAGATTA AATCAGGTCG CTATCAGCCG GTTGATATTC ATATAGAAGC GTATGACAGA
CGCGGGTTAT TGCGTGACTT AACCCAAATT ATTGATAAAG AGAACGTCAA TATTCGTCAA
GTTCAAACAC TCAGTAACGA TGATAATATT GCCTTTTTAA AGTTTCATAT TGAGGTGTCG
GGGCTGGCGC ATTTATCCAA GTTACTTGCC AAGCTTGAAC AGCAACACGG TATCTTGCAT
GCGCGGCGCG CGGTTGCTTA A
 
Protein sequence
MVKIREGLPL VDGQTTQADS ATLAAQLVAN QRSHQSANSY AQIPLDIKYQ LATRKLHTTF 
DRSVNYAYYS HDSNLENDYL RDKILDESEA FSQQELEALD LDHINIDVPT WLDNVAKRIG
QDSVPNLSAA CAFIRKHMNT SASERSGAYV TGIGMTDILT YLYQDEDALV AAMLYRSARQ
SIISLNDIEK KFGADISTLV KDTLAMGQLS EIIESNKRLE DHFVNNQRDQ LSNIYSMLIS
VTNDVRVVLI KLSERTFAMR ELTFSNEDRQ TRVAREVMTI YAPLAHRLGI AQLKWELEDL
AFRYLAPDRY KEIAKLLSEK RSERESYIQR VQDRLNESLA ESGIEGEVSG RVKHIYSIYR
KMKLKGLSFD QLYDIRALRV LVTTPSDCYH VLGLVHGLWR YIPEQFDDYI TNPKSNGYRS
LHTAVIAENK SLEVQIRTQE MHFEAELGMC AHVNYKEGLK NKKDNYLNQR ISSLRQLLSI
NNQPRSSLST GDELEETEFD DEEQLVDFDE LERIYIFSRD GDITELPKGA TVLDFAYYVH
TQVGNRAQAA RVNQRYVPLT YQLKTGEQVE IITKSSREPN RDWLVASLGY IHTNRARSKL
RQWFNKQDRD KNIEIGRQML SKELERLSVH PNSIDLNDYT QHFNVNNTDD IVVGLVTGEI
GLNQLTSHIS RQLHLEPERS EEDFAPTIDK RESGKLDAYK IQIDGLDNIE VGLAGCCHPV
HGEPIAGYIT LSRGVSVHNR GCPEYLRLIE RDPEREIKAA WKIKSGRYQP VDIHIEAYDR
RGLLRDLTQI IDKENVNIRQ VQTLSNDDNI AFLKFHIEVS GLAHLSKLLA KLEQQHGILH
ARRAVA