| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0284 |
|---|
| Symbol | |
|---|
| ID | 3514178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 346048 |
|---|
| End bp | 348033 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637668971 |
|---|
| Product | protease |
|---|
| Protein accession | YP_263588 |
|---|
| Protein GI | 71064861 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCA TCTCTCATGC TGCCAATAAT CAGCTATCTG ATATTCATTA TCAATTCGAC
TTTGAGCGTT TTTTAGAGCA TCTGGTTGAT GTTACGCTTA GGTTTACGGC AGATATAGAC
GCGCCAAACT TATGGTTGCC GGCATGGATA CCGGGCAGTT ATTTGATGCG TGAATTTGCC
CGCAATATTA CTGCGGTACA TTATGAGGTA GTAGATTGTC CAATAGGAAA GAAGCAATCA
GTAGATAGCA AAGCTGTGGA CAATGACGCA AAACCTAACA GGCATCGCGC GCAAAAAATA
GATAAGCATA CTTGGCAGTT GCCCCAGGCG AGGGCGGGAC AAACGATAAG CGTATATTAT
GAAGTATACT GTTATGATTT ATCGGTGCGC ACGGCTTATG TCGATCAGCA GCGTCTATAC
GGCAATTTTA CTTCTTTGGC ATTGGCGGTT AATGGGCAAG AGCAATCACC AGTACAAGTC
AGTTTGATGG TACCCGAAGC CTTTTTTGTT GATAAAAAGA AGGAACAAGT ATTATTGGCA
TGTGGACTTA AAGCCACGAA TTTACAAAGC GATGAGCGAG ACTTATATGA TGAGCGAGAC
TTATATAGTG TGCAAGCGGA CAGCTATCAC GAACTGATTG ATTATCCGTT TGAGATTGCG
ATACAGGAGA AGTTTGATTT TATTATTCAA GACAGTCAGC ACCAGACGCT GAGCCATCAA
TTTTTCCTCG CGGGTAAGCA CAATGCCAAT ATGGGGCGAC TGCAGCAAGA CCTCACTCAG
ATTTGTCAGA CCTATCTCAA TTGGTTGGGT GCCGCGCCGT TTGATGATTA TACTTTTATG
ACCTATGCCA GCGGGCAAGA TTATGGCGGT TTGGAGCACA TCAATTCGAC CAGTCTGATT
ACCCCGCGCC GTGATTTACC TCGTATCAAT GAGCCAGCAG TACCAAGCAG TGATTATCAA
CGATTTTTAG GCTTATGTAG CCATGAGTAT TTTCATGCGT GGTGGGTTAA GACTGTGCGT
CCCGATGTGA TGCTAGAGGT GGATTTGCGC CGCGAAGCTT TTACGCCTTT GCTATGGGTG
TTTGAAGGCT TTACCTCTTA TATTGACGAT TTTATGCTGC AAGCGTCAGG AGTCATTGAT
AAGGTAAGCT ATCTGAAGTT ATTGGCAGAA CAAATTAATC GCTATTATCA AACGCCGGGC
CGCGCGCAGC AAAGTGTGGC AGAATCGAGC TTTGATGCGT GGATTAAGCT GTATCGCAAT
GATGAAAATA CCGGCAATGC TGGTATCAGC TATTACAATA AAGGCGCTTT GGTAGCGTTA
TGCTTAGATT TAACGCTGCT AGAAAAAAGT GCGGGACGTT ATCGCTTATT TGATGTGGTA
AAAGGTTTTT ATGAACAAGC GCGGCAAAAT GAAAGCAAGC GCATCGGTAT CAGTAGTGCG
GATATGGGGA CTGTAATCGG GCAATTTATG CCAGTAGCAG AGTGGCAAGA GTTTGAACGT
CGCTATATTA ATGGCGTTGA AGAGTTACCG ATTGAGAAAT TGCTGGCTGC TAACGGCATT
CAGTTTTATA CCAATAATAA AGAAACCGCT GACAAGCATG TGCCGTGGGG TATGAGGTGT
ACTGAAACGC CAGCTGGGAT CAAGATCAAT CGCGTGACGC GTGGAAGTGC AGCGGCAAAA
GCTGGACTCT CAGCACATGA TGTTATTATC GCAATTGATG GTATTAAAGC GGATAACAAA
CAATTAGCAC TATTCAATGA TGCATCGCAC GACATTGAAT GCCATTTGTT TCGCCGTGAT
GAGCTGATGA TGGTCAAGGT TTTACCCAGA GTGCTCAACG ATAATACCCA TGCAAAAAAT
AGTTTAGAAA AAGTATTTCC GCATAGTGTT AGCTTGCGTT TCTTGAGAGC TGATCTTGAA
AACGATTTAG GTCACTCAAA TACGGAAGAA AATTGGCTTA ATGTAATGCA GATTTATAAT
GATTAA
|
|---|
| Protein sequence | MTSISHAANN QLSDIHYQFD FERFLEHLVD VTLRFTADID APNLWLPAWI PGSYLMREFA
RNITAVHYEV VDCPIGKKQS VDSKAVDNDA KPNRHRAQKI DKHTWQLPQA RAGQTISVYY
EVYCYDLSVR TAYVDQQRLY GNFTSLALAV NGQEQSPVQV SLMVPEAFFV DKKKEQVLLA
CGLKATNLQS DERDLYDERD LYSVQADSYH ELIDYPFEIA IQEKFDFIIQ DSQHQTLSHQ
FFLAGKHNAN MGRLQQDLTQ ICQTYLNWLG AAPFDDYTFM TYASGQDYGG LEHINSTSLI
TPRRDLPRIN EPAVPSSDYQ RFLGLCSHEY FHAWWVKTVR PDVMLEVDLR REAFTPLLWV
FEGFTSYIDD FMLQASGVID KVSYLKLLAE QINRYYQTPG RAQQSVAESS FDAWIKLYRN
DENTGNAGIS YYNKGALVAL CLDLTLLEKS AGRYRLFDVV KGFYEQARQN ESKRIGISSA
DMGTVIGQFM PVAEWQEFER RYINGVEELP IEKLLAANGI QFYTNNKETA DKHVPWGMRC
TETPAGIKIN RVTRGSAAAK AGLSAHDVII AIDGIKADNK QLALFNDASH DIECHLFRRD
ELMMVKVLPR VLNDNTHAKN SLEKVFPHSV SLRFLRADLE NDLGHSNTEE NWLNVMQIYN
D
|
|---|
| |