Gene Psyc_0239 details

Gene Information

• Locus tag: Psyc_0239
• Symbol: pilE
• ID: 3515082
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Psychrobacter arcticus 273-4
• Kingdom: Bacteria
• Replicon accession: NC_007204
• Strand: +
• Start bp: 286310
• End bp: 286747
• Gene Length: 438 bp
• Protein Length: 145 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637668927
• Product: pilus assembly protein PilE
• Protein accession: YP_263544
• Protein GI: 71064817
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.179125
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATAAATA CTATCAACCA AAAACCAAAC GGCTTTACTT TAATTGAGCT CATGATCGTG 
GTCGCCATCA TTGGGATACT GGCTGCTATC GCTTATCCCA GTTATCAGCG TTATATCATC 
AAGACCAAAC GCACAGACAT GATGAGTGAG ATGCACAATA TCGCTGCCGA GATTCAGAGT 
CGTAAACTGG CGCAAGGTAG TTTCGCTAAT GTCGTCACAA CGGATCTCAC TGGTAACTAT 
CCCAGACAAG GCACTGCACT ATATACGGTC GCAGCAGCGC CCAGCCCACT TACCAACACA 
TGGACAATCA CTGCAGAACC CAAGTCAAGT ACACAGATGA ACGGTGATGG GAATCTCACT 
CTCAATTATC AAGGCGTGAA ATGTCGAATA GTCAATAGCG TCAGCACGTG CGGCACAGGG 
GATGATTGGA ACAATTGA 

 

Protein sequence

MINTINQKPN GFTLIELMIV VAIIGILAAI AYPSYQRYII KTKRTDMMSE MHNIAAEIQS 
RKLAQGSFAN VVTTDLTGNY PRQGTALYTV AAAPSPLTNT WTITAEPKSS TQMNGDGNLT 
LNYQGVKCRI VNSVSTCGTG DDWNN