| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0221 |
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| Symbol | dxs |
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| ID | 3514795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 259652 |
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| End bp | 261694 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637668908 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_263528 |
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| Protein GI | 71064801 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.354524 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCAGT CACCTCATTC CCTACAGTCT CAGTCATTAT TTGCGTCAGC TGTTGATTCT
GCTGTACCGC TATCAAACCT GCAACAAACG TATGCAGTGA TCCCACGTGA GCGTCCCTAT
ACGCCACTGC TCGATAGAGT GGATAGCCCT GCTGATCTCA AAGCTTTTAG CACTGCTGAT
CTTATTGCTT TAGCCGATGA GCTAAGGCTG TTTGTATTGT ATTCAGCGGG TCAAAGTGGT
GGTCATTTTG GTGCCAATTT AGGCGTAATT GAATTGACCA TTGCGCTACA TTATTTATTG
GATGCTCCGC AAGATCAGAT AGTTTGGGAT GTGGGCCATC AAGCTTATGC GCACAAAGTA
CTGACGGGTC GCCGTGATCG GTTAGGAACT ATCCGCTCTA AAGCTGGCTT AACCGCTTTT
CCAGAACGCG CAGAATCTGT CTATGATACC TTTGGGGTTG GTCATTCATC GACATCCATC
TCAGCAGGTT TAGGCATGAG CTTAGCGCTA CGCTATCAAG GGCGTGCGCA GACCGTTGCT
TGTATTATCG GCGATGGTGC GATGACAGGT GGCATGGCTT TTGAAGCGAT GAATGATGCG
GTGCAACAAG ACGCTGATTT GATGGTGATT TTAAATGACA ATGACATGTC GATTTCCTGC
TCGATCGGTG GATTCTCGCG GCATTTAGCG ATGCTTTGGG AGTCAGGGTA TCAGGTTGAT
ATCTCTGATG CAGGCGAGCC GATATTATGT CGACGCCCTG ATATGCAAGC CTTTGATCGA
CGTAAGCGCC ATAAAAAGCA ACGTGATGTA CCGCAATTAG AAGACAATCT ATTTAAGGCG
ATTGGCTTTA CCTATTTCGG TCCTTTCGAT GGTCATAATA TTCCTGAGCT GCTGCGCGTT
TTGTCGCTTG CAAAGCAAGT CAAGGGTCCG GTTTTAGTCC ATATTTATAC CACTAAAGGT
AAAGGCTTTG CGCCTGCTGA ATTAGACCCA GTAGGTTATC ATGCTATTGG CAGTTTACCT
GCTGAAGATG ACGCGCCCAA AATTGAAAAA GCAGCGGCTA AGCCTTCCTT AAAGTACTCA
CAAGTGTTTG GGCAGTTTTT ATGTGATAAA GCAGTACAGG ACAATAAGTT GCTCGCTATT
ACCCCAGCCA TGGAAGAAGG CTCAGGAATG ATTGAGTTTG CTCGTCAGTT TCCAGAGCGT
TTCTTTGATG TAGCGATTGC TGAGCAACAC GCTGTGACGT TGGCTGGCGG CATGGCAACA
CAAGGCGTAA AGCCGATTGT GGCGATTTAT TCGACGTTCT TACAGCGCGG GTATGATCAG
CTTATTCATG ATGTTGCTTT ACAAAATCTT GATGTGATGT TTGCGATTGA TCGCGCCGGC
CTAGTTGGTG AAGATGGTGC TACGCATGCG GGCGTATTCG ATTTTGCCTT TTTACGCTGC
GTGCCCAATA TGATGATTGC GGCACCAAAA GATGAAAACG AATGTTATCA TTTGCTCAAT
ACTTGTTATG AATACCAAGG TTGTACAGCA GTGCGCTATC CGCGCGGTGT CGGCACTGGC
GCGACTATTA CGCAGCCGGC GCAAACTTAT AACATTGGTA AAGCGGTCAT AGAGTCGGTA
CTGGGTGAAA AAGATGCGCC AAAAAAATTG GCATTACTGG CATTCGGTAC GATGGTTGCA
ACGGCTCAGC AAGCGGCAGA AATGATTGCA AAATCTCCTT TATTAGCATC AAGCTGTCAG
CTGCATGTGG TCAATATGCG TTGGGTTAAG CCTTTAGATA CCACACTTTT AGAGCAGCTG
CTTTTACAAG GTGTCACTCA TATAGCGACT TTAGAAGAGC ATACGATCAT GGGCGGCGCA
GGCAGTGCGG TCAATGAATA CCTGTTAAAT GATTCTGCTG CCTTTAAAAA CCATCGCCCG
GCTATCTGTA ATATAGGTAT CCCTGATCGC TTTGTAGCGC ATGGCTCTCA ATCAGAACAG
TGGGCAGATT GTGGTTTAGA CGTAGAAGGT GTGGTCAATC AGCTCCAACA ATTATTATCT
TAA
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| Protein sequence | MQQSPHSLQS QSLFASAVDS AVPLSNLQQT YAVIPRERPY TPLLDRVDSP ADLKAFSTAD
LIALADELRL FVLYSAGQSG GHFGANLGVI ELTIALHYLL DAPQDQIVWD VGHQAYAHKV
LTGRRDRLGT IRSKAGLTAF PERAESVYDT FGVGHSSTSI SAGLGMSLAL RYQGRAQTVA
CIIGDGAMTG GMAFEAMNDA VQQDADLMVI LNDNDMSISC SIGGFSRHLA MLWESGYQVD
ISDAGEPILC RRPDMQAFDR RKRHKKQRDV PQLEDNLFKA IGFTYFGPFD GHNIPELLRV
LSLAKQVKGP VLVHIYTTKG KGFAPAELDP VGYHAIGSLP AEDDAPKIEK AAAKPSLKYS
QVFGQFLCDK AVQDNKLLAI TPAMEEGSGM IEFARQFPER FFDVAIAEQH AVTLAGGMAT
QGVKPIVAIY STFLQRGYDQ LIHDVALQNL DVMFAIDRAG LVGEDGATHA GVFDFAFLRC
VPNMMIAAPK DENECYHLLN TCYEYQGCTA VRYPRGVGTG ATITQPAQTY NIGKAVIESV
LGEKDAPKKL ALLAFGTMVA TAQQAAEMIA KSPLLASSCQ LHVVNMRWVK PLDTTLLEQL
LLQGVTHIAT LEEHTIMGGA GSAVNEYLLN DSAAFKNHRP AICNIGIPDR FVAHGSQSEQ
WADCGLDVEG VVNQLQQLLS
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