| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0203 |
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| Symbol | rpoN |
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| ID | 3514539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 242863 |
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| End bp | 244572 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637668890 |
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| Product | RNA polymerase sigma-54 factor family protein |
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| Protein accession | YP_263510 |
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| Protein GI | 71064783 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000389153 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000144237 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTATGT CGTTCGGATT GGCGACCACG CTAAGCATCT CACAAAAACT GACCCCGCAA
ATGCAGCAAG CTATTAAATT GCTGCAGCTC TCTAGTCTTG AGCTTGCGCA GGAGGTTCAA
GCGAAGCTGG ATAGTAATCC ACTACTAGAA CGCATCGAAG ACGATGAAGA TGAGTATGAA
AGTGCCGATA AAAGTGCCGA TAAAGACGCG TTAGTTGAGT TTGGCGAGCC ACTAACGCTA
GACAGCTGGA ATCAAAACAC GGCTTCTGAC ACATTTTCCG TATCTTCTTC AAGTAATAAT
GAGGATGAGT TTGAGTATGA TGACAGTATT AGCGATAGCC TAGATAAATT GCAGCAAGAC
AGTTTTGATA CGGATGCCAT AGACAGTTAT ATGCTTGAGG ACTTCGACGG TTCAAATGAA
GAAAGCCTCA ACTATGATAG CCCTTATGCA GAATATGATG GTTTTGACAC AGCCAGTGCT
GGTACAGGCA GCCCGTCAGC GCGTCCAGAT TCTGATGACT TTGATAGCTA TCAAGGCAGT
ACCAATGCGA CGATTCAAGA CCATGTGCGC TGGCAGCTAA ATTTTAAGCG ACTCTCAGAG
ACAGATACGC TTATCGCTGA GTATCTGATG GACTCTATGG ACGATATGGG TTTTGTACGG
CTTGATATCG AGGAGTTGCT ACAAAGCTTT GATACCATTG CGAGTTTTTA TCAGTGGGAT
GAGCGTGTTG AACATGACGA AGTGATGGCC GTACTGCGTA TGATTCAATC CTGTGATCCG
CTGGGGGTTG GTGCGCGAAA TCTAAGTGAA TGCCTAGCGA TTCAGCTATC TAAGCTCGAT
ACTGACATAC CGTATCTCAA ACAAGCCCAA GCGCTCTTGT CAGCCAGTGA GCATCTGGTC
AGTAATAACA TTAAAGCCTT AACTGAGCGC ACAGGACTTG CTGCACAGGA GATTACCCCC
GCACTTATGC TGTTACGCAG TTTGAATCCT TCACCAGGAT TGCTGTTTCA GAGTCGCCAA
CCTGATTATA CTCAGTCGCC CGACAGTTAT GATATCCCTG ATGTACTGGT GACGCCTATC
CGTCGCCATG ATGCCAATCA AAACACCGAC ACATCTACCC AAGAGGATGG CTGGCAGGTA
CGTCTAAACC CTGAAACTTT GCCAAAACTA CGGGTCAATC AAGAATATGC CAACCTTGTT
AAGCGCGGTG ATAATAGCCC TGATAATCAA TATCTGCGTG AAAATCTCAC CGATGCGCGC
TTGTTTATTC GCAGTATCGA AGAGCGTAAT CAGAACCTTT TGAAGGTGGC GACCAGTATC
GTCCGCTACC AGCAAGCGTT TTTGCAGTAC GGTGCCACTG CCATGCAACC GCTTATTTTA
AAGGTAATTG CAGACGAAGT CGATTTACAC GAATCAACGG TCTCGCGCCT GACTACCAGT
AAGACCATTT TGACCCCACA AGGTCTGTTT TCGCTCAAGC ACTTCTTTTC ATCACATGTT
AGCAGCAGCG ATGGCGATAT CTCATCAATT GCTATCAGCG CGATGATTAA GCAGCTTATA
GCCGATGAGG AGCCCAAAAA GCCACTATCC GACAGTAAGA TAAAAAATTA TTTGTTAGCA
GAAGGTATCG ATATTGCCAG AAGAACAGTT GCCAAATATC GTGAAGCGAT GAGTATCGGC
TCATCTACTC AGCGCAAACA AAAATATTAA
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| Protein sequence | MSMSFGLATT LSISQKLTPQ MQQAIKLLQL SSLELAQEVQ AKLDSNPLLE RIEDDEDEYE
SADKSADKDA LVEFGEPLTL DSWNQNTASD TFSVSSSSNN EDEFEYDDSI SDSLDKLQQD
SFDTDAIDSY MLEDFDGSNE ESLNYDSPYA EYDGFDTASA GTGSPSARPD SDDFDSYQGS
TNATIQDHVR WQLNFKRLSE TDTLIAEYLM DSMDDMGFVR LDIEELLQSF DTIASFYQWD
ERVEHDEVMA VLRMIQSCDP LGVGARNLSE CLAIQLSKLD TDIPYLKQAQ ALLSASEHLV
SNNIKALTER TGLAAQEITP ALMLLRSLNP SPGLLFQSRQ PDYTQSPDSY DIPDVLVTPI
RRHDANQNTD TSTQEDGWQV RLNPETLPKL RVNQEYANLV KRGDNSPDNQ YLRENLTDAR
LFIRSIEERN QNLLKVATSI VRYQQAFLQY GATAMQPLIL KVIADEVDLH ESTVSRLTTS
KTILTPQGLF SLKHFFSSHV SSSDGDISSI AISAMIKQLI ADEEPKKPLS DSKIKNYLLA
EGIDIARRTV AKYREAMSIG SSTQRKQKY
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