| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0062 |
|---|
| Symbol | pilD |
|---|
| ID | 3514627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 68477 |
|---|
| End bp | 69376 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637668744 |
|---|
| Product | type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A |
|---|
| Protein accession | YP_263370 |
|---|
| Protein GI | 71064643 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000000282125 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTA TACAGTTATT ACAAGAAAAT ATGAGTATCG CTTTGGTCGT ATTTGGTCTA
CTAGGACTTT GTGTAGGTAG CTTTTTAAAT GTGGTGATTC ATCGTATACC ACTGATGATG
GTATCGGTTT GGCGACAAGA ATGTAGCCAG TTTATGTATG AGCAAGCAGA CATACCACGT
GAGCATACGA CGCCACTGGT CAATATTATT GCCACCGATA TACCTATTAC CTTAAGCCGC
CCTGCTTCAC GCTGCCCGCA TTGTGCCCAT AAAATCAAAT GGTATGAAAA CATCCCTTTA
ATCAGCTGGA TAGTACTACG TGGTCGTTGC TCAGAATGTA AAACGACTAT TGGACTGCGT
TATCCTGTCG TTGAGCTGGT CACTGCGCTG CTATCTGTAT TGGTCATTTA TCAGTTTGGT
GTCAGTACGG CTGGGCTATC AGCATTGATT TTGGTATGGA CACTAGTCGT TTTAACCGGT
ATCGATTTTG ATACGCAGCT ATTACCTGAC CGCTTAACTT TTCCATTGGC AGGGTTGGGA
CTGGCGGTAA ACTCACAAGG CTGGTTTGTC TCCCCTACTC AGTCGATATG GGGCTTACTG
TTGGGGTTTT TATCTCTATG GATAGTGGTC AAGATATTTT ATTTGATCAC CAAAAAACAT
GGCATGGGAC AAGGTGACTT TAAATTATTG GCAGTACTGG GCGCGTGGCT TGGTCCTGTG
ATGTTGCCAT TGGTTATTCT ATTGTCATCT TTACTTGGCT CCATCGTTGG TCTTATCCTT
ATAAAAAAAC AAGGCGAGAG CAAGCCCTTT GCTTTTGGTC CTTATATTGC CATTGCGGGT
ATCGTGGCGT TGTTATATGG TTCAGATATC GTTAATTGGT ATTTAGGCAT GTATAATTAA
|
|---|
| Protein sequence | MQFIQLLQEN MSIALVVFGL LGLCVGSFLN VVIHRIPLMM VSVWRQECSQ FMYEQADIPR
EHTTPLVNII ATDIPITLSR PASRCPHCAH KIKWYENIPL ISWIVLRGRC SECKTTIGLR
YPVVELVTAL LSVLVIYQFG VSTAGLSALI LVWTLVVLTG IDFDTQLLPD RLTFPLAGLG
LAVNSQGWFV SPTQSIWGLL LGFLSLWIVV KIFYLITKKH GMGQGDFKLL AVLGAWLGPV
MLPLVILLSS LLGSIVGLIL IKKQGESKPF AFGPYIAIAG IVALLYGSDI VNWYLGMYN
|
|---|
| |