Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_5115 |
Symbol | |
ID | 3370673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 6067600 |
End bp | 6071217 |
Gene Length | 3618 bp |
Protein Length | 1205 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637655490 |
Product | helicase, C-terminal:DEAD/DEAH box helicase, N-terminal |
Protein accession | YP_238180 |
Protein GI | 66048339 |
COG category | [R] General function prediction only |
COG ID | [COG1204] Superfamily II helicase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGGAGT TTGATGAGCA ACGACTGGAT CTTGCAGAGC AAGTGCGCTT AGGGTTAGCC AACGAAAGCC GTCTTCTGCC CGAGCACGCA CGAGCATTCG TTCGCGGTTT GCAGATGACA TGGCGAGTTC CTCCGATAGC ATGGGACGAG GGAGAGACAG AGAAGCTCGT GCAGGACGCA CATAGGTTGA TACAGGCCGC GGAAGTCTGC CTCGATCTGG AGGGGCCCAA TTCGGTATCT GCCAAAGACT GTTTCCGTAG AGCAGCTGAA TTGTTGGAGT GGCTAACCCG CATGCAGGAG GAACCCTCCA GCTTTGCTCC CGTAGGATTG CTGGCTGCTG CTGCATTTCA GCTCGGTGGC CTCCCTGCGA TGGCTACAGC ACTTTTGGGG CAGCTGGAGA TTACCGACGA CGGCACTCGG CTGTTGTCGA AATTCCTAAG TGGAGACTTC AATGGGGTCG TGGAGGAAAT TCTAGCTTTC TGGGGGAGTT ATCCGGAGCT AACGAAGCGG GATTCTTCTA CCCAATTGTT AGCATCCAGC GAAGCTGGCG GCTTGGAGTG GTATTTCGTC GTAGAGTTGG TGCGCAGTAT TGGTGTCATA GCCTCCTCGT TGATGTGCGG CGAAAATGAG CGTATGCAGC AAGGCCTTCG AAAGCTCAAG GCGCTCGATA AGATGGCCAC CAGAACATAT GGGGATGAAC TCTCCATGCT CATTTCACTA TTGACAGTTG TTGCTGAAGG CTATGGTTCC ACCAGCATCT ACGGCCCGAT TTTGCAGCTG GTTGAGATCA AACCAGAGCG TGAGGCGCGC TTACGCAGAT TTGCGCGCGA TCAATTTGGG CGGGGGCGTG GCATCCTTTG GCCATCGCAG CTTCGTGGAT TGGAGCGCTT GCTAAAGTCT TCCTCGTTTG CGCTCTGCAC GCCGACAGGC TCGGGGAAGA CGTTGGTGGC CAACCTCGCA CTCATCAAAG AATTGATGCT TGCCCCAAGC GAAAAATCCG GGCCGCTTGC CCTTTATCTT GTGCCCTCAA GGGCATTAGC CGGAGAGGTT GAGGCCAAGC TTCTCAGTGA GTTAGGTAGC GATCTTGTCG TTACGGGCCT CTACGGCGGT TCGGATTGGG GGATCACGGA CTACTGGTTG AATGCTGAGA AGCCGACGGT GCTCATCGCC ACGGTCGAGA AGGCCGATGC CCTGATGCGC TATGTTGGAC CTCTGATAGT GGCTCGTTTG CAGCTTTTGA TTATCGATGA AGCACACCAG GTCGTAGTCG CGGATCGCGA TAGAGCAGAG GTGGATTTCG CGGAACACAG CAGTCGGACG CTGCGTCTGG AGAATTTTGT GTCGCGATTG TTGGCCCGAG CCCCACATAT CGCTCGCGTG GCTCTGACGG CCGTTGCCGG GGGGGCAGCA ACACCCGTCG CCTGTTGGGT AGAGGGAGGG AGTCAAGCCG AGCCTATCGG TGCAAATTAC AGGAGTACCC GGCAACTCAT CGGCACTTTG ACAGCAACCC CAGATGAGCC GGGCCAGATG CGAATCGATT TGCTTAATGG GGCTGGTCTC CACGTTCGAG GCCGAGCGAG GCCAGTATAC ATTCCCCTAC GTATTCTGCC GATGCCGAAA CCACCAGCAG CGATACGTAA CAGTCTCGCT CGCTATAACC AAATCCATGT TTTGTGGACT GCGCTCCATC TGGTTGATGG GGACCGTCGA GTCTTGATCT CCATCGCTCA GCAACCTGAA CAGACAATGA AGTGGTTTAA GGACGCGCTC GATTTACCTC AATGGAGCGA TGCTTCTAAG TTCACTCCCC CCAATGAACC TGCAAACCAA GCTTTGTTCG AAAAAGCTCG AGCAAGCTGC ATAGACTACT GCGGCAAAAA CTCCTATGAG GTCGCGTTGC TTGATCGTGG AATTGCTACC AGTCATGGCC AGATGCCTCA GCGACTTCGG CGACTGATGA CCTCTCTTAT CGACCGAAGG ATTTGTCCGA TTACGGTGGC CACAGCAACC CTCACAGAAG GGGTTAATCT GCCATTCGAT CTGATTCTGG TCCCGTCGAT AACACGTCAG TTCTACGACG CCGTCAGTGA GAAATCGAAA GTTACTCCCT TCTCCGCTGC AGAATTCCGC AACCTGGCCG GGCGCGCCGG TCGGCCAGGA AATGCACAAG GTCCGGAAGG AATTACGCTC GTTGCGATAC CGACTCAACC CTCCACGACC GCTCCCAGAC AGATTGCCTC ACAGACCAAA CAGTTAGGCC AACTGCGTAC GCACTATAGC GGTCTATTGA GCTCGCTTCG TGAGGACGAG CTTGAGGGCG GCAAGGTGCT GAGCCCTCTT TCGCTTTTGC TAGAAGCGAT CCGGGAAAAA GCAAGGACGC TGTTCAACGT CGATGGCGAG CAGTTCCTGA GTTGGCTCGA GGAAACGGCG CCTGACGAGA TCAGTGCAAA CGCTGGGTTG GTTGAGGTGG ATGATGAGTC CAGGCTAGCT GATAGTTTGG ACGAGCTTGA TGGTGTGTTG CTGACGGCTA TCGAGGAGCT CTCCCTCACT GGAGAACAGG CGGATTCAGC GGCCAAGGTC GAGGCTTTAC TTCGAAAGGT GTGGCAGTTC ACGTTCAGCA AGGTCGTGAA TGCTGAAGAG GCTTGGCTGG AACGAGCTTT TGTGCGGCGT GGGCAGGGCG TTGTCGGAAC GCTTTACAAC GATAGAGATG AAAGACGGCG TCTCTATCAA TACGGCTTCA CTCCATATGT GGGCCGTAGG TTTGAACGTA TTGTGCCCAA GATTCGAAGT GTCTTGGAAG ACTCGCAGGG CTACGGCCTT GCTAATCAGA AGCAGCGACT TGAAGTTTTT AAACGCTTGG GATTATTGAT TTCTAACGAT CCAGGGTTTG GGTTCAGAGC GCGTGCCAGT GTGACGGATC AGGGGCTCCA CGAAAATTGG GAACCTCTGC TTGCCTGGTG GATGAGCCTC CCTGGCGCGA AAGCGCCGTC TGCTCAGGAT CTAAGATCTT GGCAACGGTT TGTAACGGAG AATTTGGAGT TTCGACTAGG CGTCGCCATA GGAGCAGTTG TGGCGCAAGC CTGGACGGAA GGTGCCAATG ATCCAACCTC CGTCCCATCT CTAGAGGCTT GGAGGCAGAC CACTGGGCTA CCGTGGTTCG GTTTTTGGGC CAGAGAGATG CTGCGATGGG GTACGCTCGA TCCATTCGTT GCTTTTGCAC TTGCTCAGGG ACTAGCTGGT ACGCGTGATG AGGCAAAGGT TCTTAGAGAG AGTTTTGAAA GCTGGATGGA CTTGAGCTAT ATGGAAATCG AGATAGAGGA CTGGATCGAT CCCCAATATT TTGTTGAATG GCAGCGTACC CTTCATGAAG ACACTGAGAC ATCTTCCAGT TTACAGCAAA TAAAAACCCG ACTGACTGGG ACAGACGGTG CTAGAGGAAG TTACAGAGTT TTGCCATTGA TGAGCCGTCG CGGAGTGCGA TGGCTAGATG CATCAGGGTT CGAATTGGCT AGAAGCGAGA TGATTGAGGA AATGGGTGAA ATCTCCTATC GAGACGATTT CGAGCTACGA ATATCTCAAG GTAAGAGCTT CGTTCGTCGA ATTTTCCGCA GTTCCTAG
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Protein sequence | MAEFDEQRLD LAEQVRLGLA NESRLLPEHA RAFVRGLQMT WRVPPIAWDE GETEKLVQDA HRLIQAAEVC LDLEGPNSVS AKDCFRRAAE LLEWLTRMQE EPSSFAPVGL LAAAAFQLGG LPAMATALLG QLEITDDGTR LLSKFLSGDF NGVVEEILAF WGSYPELTKR DSSTQLLASS EAGGLEWYFV VELVRSIGVI ASSLMCGENE RMQQGLRKLK ALDKMATRTY GDELSMLISL LTVVAEGYGS TSIYGPILQL VEIKPEREAR LRRFARDQFG RGRGILWPSQ LRGLERLLKS SSFALCTPTG SGKTLVANLA LIKELMLAPS EKSGPLALYL VPSRALAGEV EAKLLSELGS DLVVTGLYGG SDWGITDYWL NAEKPTVLIA TVEKADALMR YVGPLIVARL QLLIIDEAHQ VVVADRDRAE VDFAEHSSRT LRLENFVSRL LARAPHIARV ALTAVAGGAA TPVACWVEGG SQAEPIGANY RSTRQLIGTL TATPDEPGQM RIDLLNGAGL HVRGRARPVY IPLRILPMPK PPAAIRNSLA RYNQIHVLWT ALHLVDGDRR VLISIAQQPE QTMKWFKDAL DLPQWSDASK FTPPNEPANQ ALFEKARASC IDYCGKNSYE VALLDRGIAT SHGQMPQRLR RLMTSLIDRR ICPITVATAT LTEGVNLPFD LILVPSITRQ FYDAVSEKSK VTPFSAAEFR NLAGRAGRPG NAQGPEGITL VAIPTQPSTT APRQIASQTK QLGQLRTHYS GLLSSLREDE LEGGKVLSPL SLLLEAIREK ARTLFNVDGE QFLSWLEETA PDEISANAGL VEVDDESRLA DSLDELDGVL LTAIEELSLT GEQADSAAKV EALLRKVWQF TFSKVVNAEE AWLERAFVRR GQGVVGTLYN DRDERRRLYQ YGFTPYVGRR FERIVPKIRS VLEDSQGYGL ANQKQRLEVF KRLGLLISND PGFGFRARAS VTDQGLHENW EPLLAWWMSL PGAKAPSAQD LRSWQRFVTE NLEFRLGVAI GAVVAQAWTE GANDPTSVPS LEAWRQTTGL PWFGFWAREM LRWGTLDPFV AFALAQGLAG TRDEAKVLRE SFESWMDLSY MEIEIEDWID PQYFVEWQRT LHEDTETSSS LQQIKTRLTG TDGARGSYRV LPLMSRRGVR WLDASGFELA RSEMIEEMGE ISYRDDFELR ISQGKSFVRR IFRSS
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