Gene Psyr_5115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_5115 
Symbol 
ID3370673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp6067600 
End bp6071217 
Gene Length3618 bp 
Protein Length1205 aa 
Translation table11 
GC content54% 
IMG OID637655490 
Producthelicase, C-terminal:DEAD/DEAH box helicase, N-terminal 
Protein accessionYP_238180 
Protein GI66048339 
COG category[R] General function prediction only 
COG ID[COG1204] Superfamily II helicase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGGAGT TTGATGAGCA ACGACTGGAT CTTGCAGAGC AAGTGCGCTT AGGGTTAGCC 
AACGAAAGCC GTCTTCTGCC CGAGCACGCA CGAGCATTCG TTCGCGGTTT GCAGATGACA
TGGCGAGTTC CTCCGATAGC ATGGGACGAG GGAGAGACAG AGAAGCTCGT GCAGGACGCA
CATAGGTTGA TACAGGCCGC GGAAGTCTGC CTCGATCTGG AGGGGCCCAA TTCGGTATCT
GCCAAAGACT GTTTCCGTAG AGCAGCTGAA TTGTTGGAGT GGCTAACCCG CATGCAGGAG
GAACCCTCCA GCTTTGCTCC CGTAGGATTG CTGGCTGCTG CTGCATTTCA GCTCGGTGGC
CTCCCTGCGA TGGCTACAGC ACTTTTGGGG CAGCTGGAGA TTACCGACGA CGGCACTCGG
CTGTTGTCGA AATTCCTAAG TGGAGACTTC AATGGGGTCG TGGAGGAAAT TCTAGCTTTC
TGGGGGAGTT ATCCGGAGCT AACGAAGCGG GATTCTTCTA CCCAATTGTT AGCATCCAGC
GAAGCTGGCG GCTTGGAGTG GTATTTCGTC GTAGAGTTGG TGCGCAGTAT TGGTGTCATA
GCCTCCTCGT TGATGTGCGG CGAAAATGAG CGTATGCAGC AAGGCCTTCG AAAGCTCAAG
GCGCTCGATA AGATGGCCAC CAGAACATAT GGGGATGAAC TCTCCATGCT CATTTCACTA
TTGACAGTTG TTGCTGAAGG CTATGGTTCC ACCAGCATCT ACGGCCCGAT TTTGCAGCTG
GTTGAGATCA AACCAGAGCG TGAGGCGCGC TTACGCAGAT TTGCGCGCGA TCAATTTGGG
CGGGGGCGTG GCATCCTTTG GCCATCGCAG CTTCGTGGAT TGGAGCGCTT GCTAAAGTCT
TCCTCGTTTG CGCTCTGCAC GCCGACAGGC TCGGGGAAGA CGTTGGTGGC CAACCTCGCA
CTCATCAAAG AATTGATGCT TGCCCCAAGC GAAAAATCCG GGCCGCTTGC CCTTTATCTT
GTGCCCTCAA GGGCATTAGC CGGAGAGGTT GAGGCCAAGC TTCTCAGTGA GTTAGGTAGC
GATCTTGTCG TTACGGGCCT CTACGGCGGT TCGGATTGGG GGATCACGGA CTACTGGTTG
AATGCTGAGA AGCCGACGGT GCTCATCGCC ACGGTCGAGA AGGCCGATGC CCTGATGCGC
TATGTTGGAC CTCTGATAGT GGCTCGTTTG CAGCTTTTGA TTATCGATGA AGCACACCAG
GTCGTAGTCG CGGATCGCGA TAGAGCAGAG GTGGATTTCG CGGAACACAG CAGTCGGACG
CTGCGTCTGG AGAATTTTGT GTCGCGATTG TTGGCCCGAG CCCCACATAT CGCTCGCGTG
GCTCTGACGG CCGTTGCCGG GGGGGCAGCA ACACCCGTCG CCTGTTGGGT AGAGGGAGGG
AGTCAAGCCG AGCCTATCGG TGCAAATTAC AGGAGTACCC GGCAACTCAT CGGCACTTTG
ACAGCAACCC CAGATGAGCC GGGCCAGATG CGAATCGATT TGCTTAATGG GGCTGGTCTC
CACGTTCGAG GCCGAGCGAG GCCAGTATAC ATTCCCCTAC GTATTCTGCC GATGCCGAAA
CCACCAGCAG CGATACGTAA CAGTCTCGCT CGCTATAACC AAATCCATGT TTTGTGGACT
GCGCTCCATC TGGTTGATGG GGACCGTCGA GTCTTGATCT CCATCGCTCA GCAACCTGAA
CAGACAATGA AGTGGTTTAA GGACGCGCTC GATTTACCTC AATGGAGCGA TGCTTCTAAG
TTCACTCCCC CCAATGAACC TGCAAACCAA GCTTTGTTCG AAAAAGCTCG AGCAAGCTGC
ATAGACTACT GCGGCAAAAA CTCCTATGAG GTCGCGTTGC TTGATCGTGG AATTGCTACC
AGTCATGGCC AGATGCCTCA GCGACTTCGG CGACTGATGA CCTCTCTTAT CGACCGAAGG
ATTTGTCCGA TTACGGTGGC CACAGCAACC CTCACAGAAG GGGTTAATCT GCCATTCGAT
CTGATTCTGG TCCCGTCGAT AACACGTCAG TTCTACGACG CCGTCAGTGA GAAATCGAAA
GTTACTCCCT TCTCCGCTGC AGAATTCCGC AACCTGGCCG GGCGCGCCGG TCGGCCAGGA
AATGCACAAG GTCCGGAAGG AATTACGCTC GTTGCGATAC CGACTCAACC CTCCACGACC
GCTCCCAGAC AGATTGCCTC ACAGACCAAA CAGTTAGGCC AACTGCGTAC GCACTATAGC
GGTCTATTGA GCTCGCTTCG TGAGGACGAG CTTGAGGGCG GCAAGGTGCT GAGCCCTCTT
TCGCTTTTGC TAGAAGCGAT CCGGGAAAAA GCAAGGACGC TGTTCAACGT CGATGGCGAG
CAGTTCCTGA GTTGGCTCGA GGAAACGGCG CCTGACGAGA TCAGTGCAAA CGCTGGGTTG
GTTGAGGTGG ATGATGAGTC CAGGCTAGCT GATAGTTTGG ACGAGCTTGA TGGTGTGTTG
CTGACGGCTA TCGAGGAGCT CTCCCTCACT GGAGAACAGG CGGATTCAGC GGCCAAGGTC
GAGGCTTTAC TTCGAAAGGT GTGGCAGTTC ACGTTCAGCA AGGTCGTGAA TGCTGAAGAG
GCTTGGCTGG AACGAGCTTT TGTGCGGCGT GGGCAGGGCG TTGTCGGAAC GCTTTACAAC
GATAGAGATG AAAGACGGCG TCTCTATCAA TACGGCTTCA CTCCATATGT GGGCCGTAGG
TTTGAACGTA TTGTGCCCAA GATTCGAAGT GTCTTGGAAG ACTCGCAGGG CTACGGCCTT
GCTAATCAGA AGCAGCGACT TGAAGTTTTT AAACGCTTGG GATTATTGAT TTCTAACGAT
CCAGGGTTTG GGTTCAGAGC GCGTGCCAGT GTGACGGATC AGGGGCTCCA CGAAAATTGG
GAACCTCTGC TTGCCTGGTG GATGAGCCTC CCTGGCGCGA AAGCGCCGTC TGCTCAGGAT
CTAAGATCTT GGCAACGGTT TGTAACGGAG AATTTGGAGT TTCGACTAGG CGTCGCCATA
GGAGCAGTTG TGGCGCAAGC CTGGACGGAA GGTGCCAATG ATCCAACCTC CGTCCCATCT
CTAGAGGCTT GGAGGCAGAC CACTGGGCTA CCGTGGTTCG GTTTTTGGGC CAGAGAGATG
CTGCGATGGG GTACGCTCGA TCCATTCGTT GCTTTTGCAC TTGCTCAGGG ACTAGCTGGT
ACGCGTGATG AGGCAAAGGT TCTTAGAGAG AGTTTTGAAA GCTGGATGGA CTTGAGCTAT
ATGGAAATCG AGATAGAGGA CTGGATCGAT CCCCAATATT TTGTTGAATG GCAGCGTACC
CTTCATGAAG ACACTGAGAC ATCTTCCAGT TTACAGCAAA TAAAAACCCG ACTGACTGGG
ACAGACGGTG CTAGAGGAAG TTACAGAGTT TTGCCATTGA TGAGCCGTCG CGGAGTGCGA
TGGCTAGATG CATCAGGGTT CGAATTGGCT AGAAGCGAGA TGATTGAGGA AATGGGTGAA
ATCTCCTATC GAGACGATTT CGAGCTACGA ATATCTCAAG GTAAGAGCTT CGTTCGTCGA
ATTTTCCGCA GTTCCTAG
 
Protein sequence
MAEFDEQRLD LAEQVRLGLA NESRLLPEHA RAFVRGLQMT WRVPPIAWDE GETEKLVQDA 
HRLIQAAEVC LDLEGPNSVS AKDCFRRAAE LLEWLTRMQE EPSSFAPVGL LAAAAFQLGG
LPAMATALLG QLEITDDGTR LLSKFLSGDF NGVVEEILAF WGSYPELTKR DSSTQLLASS
EAGGLEWYFV VELVRSIGVI ASSLMCGENE RMQQGLRKLK ALDKMATRTY GDELSMLISL
LTVVAEGYGS TSIYGPILQL VEIKPEREAR LRRFARDQFG RGRGILWPSQ LRGLERLLKS
SSFALCTPTG SGKTLVANLA LIKELMLAPS EKSGPLALYL VPSRALAGEV EAKLLSELGS
DLVVTGLYGG SDWGITDYWL NAEKPTVLIA TVEKADALMR YVGPLIVARL QLLIIDEAHQ
VVVADRDRAE VDFAEHSSRT LRLENFVSRL LARAPHIARV ALTAVAGGAA TPVACWVEGG
SQAEPIGANY RSTRQLIGTL TATPDEPGQM RIDLLNGAGL HVRGRARPVY IPLRILPMPK
PPAAIRNSLA RYNQIHVLWT ALHLVDGDRR VLISIAQQPE QTMKWFKDAL DLPQWSDASK
FTPPNEPANQ ALFEKARASC IDYCGKNSYE VALLDRGIAT SHGQMPQRLR RLMTSLIDRR
ICPITVATAT LTEGVNLPFD LILVPSITRQ FYDAVSEKSK VTPFSAAEFR NLAGRAGRPG
NAQGPEGITL VAIPTQPSTT APRQIASQTK QLGQLRTHYS GLLSSLREDE LEGGKVLSPL
SLLLEAIREK ARTLFNVDGE QFLSWLEETA PDEISANAGL VEVDDESRLA DSLDELDGVL
LTAIEELSLT GEQADSAAKV EALLRKVWQF TFSKVVNAEE AWLERAFVRR GQGVVGTLYN
DRDERRRLYQ YGFTPYVGRR FERIVPKIRS VLEDSQGYGL ANQKQRLEVF KRLGLLISND
PGFGFRARAS VTDQGLHENW EPLLAWWMSL PGAKAPSAQD LRSWQRFVTE NLEFRLGVAI
GAVVAQAWTE GANDPTSVPS LEAWRQTTGL PWFGFWAREM LRWGTLDPFV AFALAQGLAG
TRDEAKVLRE SFESWMDLSY MEIEIEDWID PQYFVEWQRT LHEDTETSSS LQQIKTRLTG
TDGARGSYRV LPLMSRRGVR WLDASGFELA RSEMIEEMGE ISYRDDFELR ISQGKSFVRR
IFRSS