| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_5085 |
|---|
| Symbol | mdoD |
|---|
| ID | 3370643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 6031871 |
|---|
| End bp | 6033490 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637655460 |
|---|
| Product | glucan biosynthesis protein D |
|---|
| Protein accession | YP_238150 |
|---|
| Protein GI | 66048309 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCA GAAATCTCCT GAAAGCGTCC ATGGCGTTGG CCGCCTACGG CAGCGTATCG
GCCTCAGGGC TTTTTGCTGC GCGGGCACTG GCCGCCGCAG CCGATGGCGA GATCGAACAC
TTCGATTTTG CAGAGTTGCA GGCGCATGCC AAGAAGCTTG CGAGCAAAGG GTATGTGAGC
AACAAGCAGG TGCTGCCACC GGTACTTGCG AACATGACGC CGCAGCAATT CAATGCCATC
CGCTACGACC CGAATCACTC GCTGTGGAAA GACGTCCACG GCCAGCTCGA CGTGCATTTC
TTCCACGTCG GCATGGGTTT CAAGACCCCC GTACGCATGT ACAGCGTCGA TCCGCAGAGC
AAGCAGGCGC GCGAAGTGCA TTTCCGCCAT GACCTGTTCA ACTACGAGAA CAGCGGCATC
GACAAGAACC TGGTCAAGGG CGACCTGGGC TTTGCCGGTT TCAAACTGTT CAAGGCGCCT
GAAATCGCCA TCAATGACGT CGTTTCGTTC CTCGGCGCCA GCTACTTCCG CGCGGTGGAC
AGCAACAAGC AATACGGTCT CTCGGCCCGC GGCCTGGCCA TCGACAGTTA CGCCAAGCGT
CAGGAAGAAT TTCCGGACTT CACCAAGTTC TGGTTTGAAA CACCGGACAA GAACGCGACA
CGCTTCGTGG TTTACGCACT GCTCGATTCG CCGAGCGCGA CGGGTGCCTA TCGCTTCGAC
ATCGACTGTC AGGCCGGCCA GGTGGTCATG GAAATCGACG CGCACGTCAA CGCGCGTACC
GACATCCAGC AGTTGGGCAT TTCGCCGATG ACCAGCATGT TCAGCTGCGG CACTCACGAA
CGCCGTATGT GCGACACCAT CCACCCGCAA ATCCACGACT CGGATCGCCT GTCGATGTGG
CGTGGCAACG GTGAGTGGAT CTGCCGTCCG CTGAATAACC CGGCCAAACC GCAATTCAGC
GCGTTCTCCG ACACCGATCC GAAAGGCTTC GGGCTGGTAC AGAGCGATCA CGAATTCTCC
AGCTATCAGG ACACGGTCGT CTGGTACAGC CGTCGTCCAA GCCTGTGGGT CGAGCCGATC
ACCGCGTGGG GCGAAGGCGA GGTCAGCCTG CTGGAACTGC CGACCACCGG CGAGACGATG
GACAACATCG TGGTGTTCTG GACACCGAAG ACGCCGGTCA AGGCCGGGGA TTCGATGAAC
TACGGCTACA AGCTGTTCTG GAGCCCGCTG CCGCCAGTGA GCACGCCGCT GGCACAGGTC
CATGCGACAC GTTCAGGCAT GGGCGGTTTC CTCGAAGGCT GGGCACCGGG CGAGCATTAC
CCGACAACCT GGGCCCGCCG CTTTGCGGTG GACTTCAACG GTGGCGGTCT GGATCGCTTG
CCGGAAGGCA CCGGGATCGA ACCCATCGTC ACGGTCACCC ATGGCAAGGT GCAGGACTTC
AACATCCTTG TGCTGCCGGA CATCAAGGGC TACCGCGTCA CCTTCGACTG GGTACCGGAC
AGCGACTCGG TCGAGCCGGT TGAAATGCGC ATGTTCATCC GCACTGGCGA CCGTACGCTG
AGCGAGACCT GGCTCTACCA GTACTTCCCG CCCGCACCGG ACAAACGCAA ATACCCGTAA
|
|---|
| Protein sequence | MNRRNLLKAS MALAAYGSVS ASGLFAARAL AAAADGEIEH FDFAELQAHA KKLASKGYVS
NKQVLPPVLA NMTPQQFNAI RYDPNHSLWK DVHGQLDVHF FHVGMGFKTP VRMYSVDPQS
KQAREVHFRH DLFNYENSGI DKNLVKGDLG FAGFKLFKAP EIAINDVVSF LGASYFRAVD
SNKQYGLSAR GLAIDSYAKR QEEFPDFTKF WFETPDKNAT RFVVYALLDS PSATGAYRFD
IDCQAGQVVM EIDAHVNART DIQQLGISPM TSMFSCGTHE RRMCDTIHPQ IHDSDRLSMW
RGNGEWICRP LNNPAKPQFS AFSDTDPKGF GLVQSDHEFS SYQDTVVWYS RRPSLWVEPI
TAWGEGEVSL LELPTTGETM DNIVVFWTPK TPVKAGDSMN YGYKLFWSPL PPVSTPLAQV
HATRSGMGGF LEGWAPGEHY PTTWARRFAV DFNGGGLDRL PEGTGIEPIV TVTHGKVQDF
NILVLPDIKG YRVTFDWVPD SDSVEPVEMR MFIRTGDRTL SETWLYQYFP PAPDKRKYP
|
|---|
| |