| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_5065 |
|---|
| Symbol | uvrD |
|---|
| ID | 3370623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 6008585 |
|---|
| End bp | 6010768 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637655440 |
|---|
| Product | DNA-dependent helicase II |
|---|
| Protein accession | YP_238130 |
|---|
| Protein GI | 66048289 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGATG ATCTCTCTCT TCTTCTGAAT TCCCTCAACG ATGCCCAACG TCAGGCCGTA
GCTGCCTCTC TGGGTCGTCA GTTGGTCCTG GCTGGTGCTG GCTCCGGCAA AACCCGTGTG
CTGGTGCATC GCATCGCCTG GCTGATGCAG GTCGAGCAAG CCTCCCCGCA TTCGGTCCTG
TCGGTGACGT TCACCAACAA GGCCGCCGCC GAGATGCGCC ACCGTATCGA GCAGCTGATG
GGCATCAGCC CGGCTGGCAT GTGGGTGGGC ACCTTCCACG GTCTGGCCCA CCGCCTGTTG
CGTGCGCACT GGCAGGAAGC CGGGCTGGTA CAGACCTTCC AGATTCTCGA CAGCGACGAC
CAGCAGCGTC TGGTAAAGCG CGTGATGCGC GAGCTGGGCC TGGACGAACA ACGCTGGCCT
GCACGTCAGG CCCAGTGGTT CATCAATGGT CAGAAAGACG AAGGCCTGCG CCCGAAACAT
ATTCAGGCCA GCGGCGACCT GTTCCTGACC ACCATGAAAA GCGTTTACGA AGCCTACGAG
ATCGCCTGCC AACGGGCCGG CGTCATCGAC TTCTCCGAAC TGCTGCTACG CGCACTCGAC
CTGTGGCGCG ATAACCCGGG CTTGCTGGCG CATTATCAGC GCCGCTTCCG TCACGTTCTG
GTGGACGAGT TCCAGGACAC CAACGCCGTG CAGTACGCCT GGCTGCGCCT GCTCGCCCAG
GGGGGCGACA GCCTGATGGT GGTCGGCGAC GACGATCAGT CCATTTACGG CTGGCGTGGC
GCGAAGATCG AGAACATCCA CCAGTATTCC TCGGACTTCC CGGATACCGA AGTCATCCGC
CTGGAGCAGA ACTACCGCTC CACGGCGAGC ATCCTCAAGG CCGCCAATGG CTTGATCATC
AATAACAGTG GTCGCCTGGG CAAGGAATTG TGGACCGACG TCGGCGATGG CGAGCTGATC
AATCTGTACG CCGCGTTCAA CGAGCACGAT GAAGCGCGTT ACGTGGTCGA GACCATCGAG
AGCGCGCTGA AAACCGGTAT TTCGCGCAAC GATATCGCCA TTCTGTACCG CTCCAACGCC
CAGTCGCGGG TGCTTGAAGA AGCCCTGCTG CGTGAGCGTA TTCCGTACCG CATCTACGGC
GGACAGCGCT TCTTCGAGCG TGCCGAAATC AAGAACGCCA TGGCCTACAT GCGCTTGCTG
GAAGGCCGTG GCAACGATGC GGCACTGGAG CGGGTGATCA ATGTTCCGGC GCGCGGCATC
GGTGAAAAGA CCGTCGAAGC GATTCGCGAG CATGCGCGTC ATGCCGACGT CTCCATGTGG
GAAGCCATGC GCCTGCTGGT GGCCAACAAG GGCCTGACCG GACGCGCCGC CACTGCCCTG
GGCGGTTTCA TCGAGCTGAT CGAGAACCTC GCGGCCAAGG TCATGGAGAT GCCGCTGCAC
CTGATGACCC AGACGGTGAT CGAACAGTCC GGACTGATTA CCTATCACGA GCAGGAAAAA
GGCGAGAAAG GTCAGGCGCG GGTAGAAAAC CTTGAGGAAC TGGTCAGCGC TGCGCGTGCC
TTCGAGAATC ACGAAAGCGA AGAAGACCTG ACGCCACTGG CAGCGTTCCT GGGGCATGCC
TCGCTGGAAG CGGGCGACAC CCAGGCGCAG GAGCATGAAG ACAGCATTCA GCTGATGACC
CTGCACAGCG CCAAGGGCCT GGAATTCCCG CATGTGTTCC TGGTGGGCAT GGAGGAAGGG
CTGTTCCCGC ACAAGATGAG CCTGGAAGAA CCAGGCCGTC TTGAAGAGGA ACGGCGTCTG
GCCTATGTCG GCATCACCCG GGCCATGAAA CAGCTGGTGA TGACCTACGC CGAGACGCGT
CGTCTGTACG GCAGCGAAAC CTACAACAAG GTCTCGCGTT TCGTACGGGA GATCCCGCCG
GCGCTGATTC AGGAAGTCCG GCTGTCCAAC AGCGTCAACC GTCCGTTCGG CGGCACGCCG
AAATTCAACA GCAGCAGCCT GTTCAACGGC ACCGGCATTC CGGAAACCGA GTTCACCATG
GGCCAGCGCG TCCAGCATGC GGTGTTCGGC GAAGGCGTGA TCCTCAACTT CGAAGGCGCT
GGCGCCCAGG CGCGGGTGCA GGTCAACTTC TCCGAGGGCA GCAAGTGGCT GATGATGGGC
TACGCGAAGC TGGTGCCGTT GTAG
|
|---|
| Protein sequence | MRDDLSLLLN SLNDAQRQAV AASLGRQLVL AGAGSGKTRV LVHRIAWLMQ VEQASPHSVL
SVTFTNKAAA EMRHRIEQLM GISPAGMWVG TFHGLAHRLL RAHWQEAGLV QTFQILDSDD
QQRLVKRVMR ELGLDEQRWP ARQAQWFING QKDEGLRPKH IQASGDLFLT TMKSVYEAYE
IACQRAGVID FSELLLRALD LWRDNPGLLA HYQRRFRHVL VDEFQDTNAV QYAWLRLLAQ
GGDSLMVVGD DDQSIYGWRG AKIENIHQYS SDFPDTEVIR LEQNYRSTAS ILKAANGLII
NNSGRLGKEL WTDVGDGELI NLYAAFNEHD EARYVVETIE SALKTGISRN DIAILYRSNA
QSRVLEEALL RERIPYRIYG GQRFFERAEI KNAMAYMRLL EGRGNDAALE RVINVPARGI
GEKTVEAIRE HARHADVSMW EAMRLLVANK GLTGRAATAL GGFIELIENL AAKVMEMPLH
LMTQTVIEQS GLITYHEQEK GEKGQARVEN LEELVSAARA FENHESEEDL TPLAAFLGHA
SLEAGDTQAQ EHEDSIQLMT LHSAKGLEFP HVFLVGMEEG LFPHKMSLEE PGRLEEERRL
AYVGITRAMK QLVMTYAETR RLYGSETYNK VSRFVREIPP ALIQEVRLSN SVNRPFGGTP
KFNSSSLFNG TGIPETEFTM GQRVQHAVFG EGVILNFEGA GAQARVQVNF SEGSKWLMMG
YAKLVPL
|
|---|
| |