| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_5008 |
|---|
| Symbol | |
|---|
| ID | 3370560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5940336 |
|---|
| End bp | 5941073 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637655377 |
|---|
| Product | transcriptional regulator GntR |
|---|
| Protein accession | YP_238073 |
|---|
| Protein GI | 66048232 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.374928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAT CAGATAGAGA AGCCTTTCTG GGCTCCGTAC TGGGCAATGA GCAGCCTCCG
GCGCACCTTG CCAGAACCGT GATTGAAGAA AAGCTGCGAA ACGCCATTAT CGATGGCAGC
CTGCCAAGCG GCACGGCATT GCGCCAACAG GAACTGGCGA CGCTGTTTGG CGTCAGCCGC
ATGCCTGTGC GCGAAGCACT GCGCCAGCTC GAGGCGCAGT CGTTGCTGCG TGTCGAAACG
CACAAGGGCG CGGTGGTCGC GCCGCTGATC ACCGAAGACG CAGTGGACGC CTATGCCCTG
CGCATACTGC TGGAATCCGA AGCGTTGCGT CTGTCTATCC CGTTGCTGGA TGCCGACGAT
CTGGCGGCGG CCAAGGGCTA CATCGAGCAG CTTGAAGTCG AGACGGATTT CGGCCAGATC
GGCAGACTCA ATCGGATGTT CCACCTTTCG CTGTATGCCA AGAGCCACAA CACGCGTCTC
ATGCGTCTGG TTGAAGAAGG CCTGAACGAA GAAGAACGCT TCCTGCGTTT CAATCTGTCC
GATATGGGCC TGGGCAAGCT TTCTCAGGAT GACCATTGGC AACTGTTGCG GCTCGCCGAG
CAGAAAGCGA TCGAACCCTG TGTCGAAGCA CTGCAGCATC ACCTCAACCG AGGCGTTCAG
GCTGTCACTC AATACCTGAA CAGCAAAAAG GCCACCAAGG CCAAGCCGCC CCGCGCAGCG
AAGAAAAACC CCGCCTGA
|
|---|
| Protein sequence | MRKSDREAFL GSVLGNEQPP AHLARTVIEE KLRNAIIDGS LPSGTALRQQ ELATLFGVSR
MPVREALRQL EAQSLLRVET HKGAVVAPLI TEDAVDAYAL RILLESEALR LSIPLLDADD
LAAAKGYIEQ LEVETDFGQI GRLNRMFHLS LYAKSHNTRL MRLVEEGLNE EERFLRFNLS
DMGLGKLSQD DHWQLLRLAE QKAIEPCVEA LQHHLNRGVQ AVTQYLNSKK ATKAKPPRAA
KKNPA
|
|---|
| |