| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4990 |
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| Symbol | |
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| ID | 3370542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5918400 |
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| End bp | 5921003 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637655359 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_238055 |
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| Protein GI | 66048214 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCCGACG ATAATTGGCT GGCACTCAAG TACGACCACC TCTCGCGACT GGTCGAAGAA
ACCGACCCGC TAGGGCGCAA GATCACCTAC AAGCATCATC TGGCGACCAC GCTGGTGACA
CAGACGACTT TCCCTGATGG CAGCACGTGG AAGGCCCGTT ACGATTCCAG AGGCAATCTT
CTGGTCGAAA CCGACGCACT TGGGAACAAG ACCGAATACC TCAACAGTGA AGATGGCCTG
CCACACACCA TCATTGATGC GACCTACAAA TCCAAATACC TGTGGTGGAA CAGCCTCGCT
CAGGTTGTGC ACTTTCAGGA CTGTTCAGGC AAAGACACTT ATTACCGCTA TGACGATCGC
GGTCATCTGA TCGCCGTCAC CGATGCCCTG AACAACACCA CCACGCTGGA ACGCAAACCC
GACGGCGAAG TGCTGCGCAT CAACCATCCC GATGGCAGCG TTGAGTCCTT CACCTATAAC
GCGCTCGGCC AGGTGCTTTC GCACACCGAC GGCAAAGGCC AGATAACGCG GTTGTCCCGC
AACGCCCGTG GCCTGCCCAC CCGGCGCGAG GACGCCAAGG GCAAAGCCGT TGCCTACCAG
TACGACAAGG CCATTCGCCT AACGGCACTG GTCAACGAAA ACAACGCCAC TTACAACTTC
GTGTACGACA ACGCAGACCG TCTGATCGAA GAAAAACGCA TCGACAACCT CACTCGCCGT
TTCAGCTACA ACCTCGGCGG GCACCTGACA CAGGTCGAGG AAATCGGCTA CGGCGAAAAA
GGCGAACAAC CACGGCGCAG CACCCACCTG GAGCGCGACC CGATTGGTCG CCTGCTCGCC
AAACTCAACG ACGACGCGCG CCAAAACTAC GCCTACGACG ACGGCGACCG ACTGCTGTCA
ATCGAGCGCA AGCCGACGGA CACCGGCAGA AAACTCGGTG TTGCCGCCGA GAAACTGGAA
TTTGCCTACG ACCTGCTCGG CCGCCTCGTC AAAGAGACCA CATCCCAAGG CGCACTTGCC
TACGAGTACG ATCCGCTCAG CAACCTGACC ACGCTGACAC TTCCTACCGG CCAGCACCTG
AATCACCTGT ACTACGGCAG CGGTCACCTG CACCAGTTGA ACCTCGATGG CCAGTTGATC
AGCGACATGG AACGCGACGA TCTCCATCGC GAGATCTACC GCACCCAAGG CAAGCTGACC
AGTTGCTTCG GCTATGACAG CATGGGACGC AAGGCCTGGC AGTACGCCAC AACCCTGCCC
GCTGAAAAGC TATCGCAGAT CCAGAACCCG CTCATAAAGC CAGAGCGCTA CGTCGAACAC
GCTTACAACC CGATTCACCG CCGCTACGAA TACGACCCTG CCGGCGAACT GAGCCGCACC
CTCGACAAAC TGCGCGGCGA AACCCAGTAT GAATACGAAG CCAACGGCCA GTTGCTGGCG
CGCAACACCG GCCGAGTGGT CGACGGCGAG GAATTCCGCT ACGACGCCGC TGCCAACCGC
CTCAACTTCA ACACCAGCCG CTTCGATCAC GTCAAAGACA ACCGCCTCAG ACAATGGGCG
AACCACGAAT ACAAATACGA CGCCTGGGGC AACCTGATCG AAACAGTTGT CGGCATCGTA
CGCTGGCAGA CTTTCACCTA CGACTGCGAA AACCGCCTGG TCAAAACCGA GACCATGGCC
GACACGCAGG TGGAAAGTAC CAGCAGTTAC CAGTACGACA GTCTTGGCAG GCGCGTCGCC
AAACAGTCCG AGATCAAAGG CCAGACCGAC CACAAACGCT TCCTCTGGCA AGGCTTGCGC
ATGCTGCGTG AGGAAAGTCC GGGCCAGAGC AGCCTGTATA TCTACGAGCC CGGCAGCTAT
GCGCCGCTGG CACGCGTGGA TGAAAAAGAA GGCGAGGTAG AGAACACGGT TTACTACTTC
CACACCGACC AGATCGGTAC ACCGCTGGAA ATGACCGACG CCGAAGGGCA GATTGTCTGG
CAGGCCAAGT ACCGGGCGTG GGGGGCGGTT GAGAAGCTGG TGGTGAACAA GGTCGAGCAG
AACCTAAGGT TTCAAGGGCA GTATTTTGAT GCCGAGACGG GGCTGCATTA CAATACGTTT
CGGTATTATG ACCCGGAGAT TGGGCGGTTT ATTACGCAGG ATCCGATTGG GTTGTTGGGT
GGGTTTAATC TTTATCAATA TGCCCCTAAT ACCAACGGAT GGATTGACCC GCTTGGATGG
ACTGGGCTAG ATGCAAGCGG CCGCCCTCTT TCAAGTAGTC AATACAGCGT TTGGAGTAGC
GTAGAAATGC CCACAGAAAT TCATGGATCT GGGCGCAGCA CCCACTTCAA GTACGCTAAC
GAGGAGTTAT ATAATAGAAC ATTAAAAAGC CCTGAACTAA AGTCAGCTCT TCCTCCAGAA
GTAGTAGAGC ACATTCAACC TGGTCCTAGA GGAGGTTTCA GTGATAGAAG CCCTCCAAAC
CATTCGTGGC ATCATAATGC TCAAAGCCCT AAAGATATTG AGTTGATGCC TAGAGCGCAA
CATAAGGCTC CAGGCCCCGT ACAGAACAGC CTCCACCCTA ACCAGCAGGG TGGATTTAAA
AAGCTGCAAA GCTCAGCATG TTGA
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| Protein sequence | MPDDNWLALK YDHLSRLVEE TDPLGRKITY KHHLATTLVT QTTFPDGSTW KARYDSRGNL
LVETDALGNK TEYLNSEDGL PHTIIDATYK SKYLWWNSLA QVVHFQDCSG KDTYYRYDDR
GHLIAVTDAL NNTTTLERKP DGEVLRINHP DGSVESFTYN ALGQVLSHTD GKGQITRLSR
NARGLPTRRE DAKGKAVAYQ YDKAIRLTAL VNENNATYNF VYDNADRLIE EKRIDNLTRR
FSYNLGGHLT QVEEIGYGEK GEQPRRSTHL ERDPIGRLLA KLNDDARQNY AYDDGDRLLS
IERKPTDTGR KLGVAAEKLE FAYDLLGRLV KETTSQGALA YEYDPLSNLT TLTLPTGQHL
NHLYYGSGHL HQLNLDGQLI SDMERDDLHR EIYRTQGKLT SCFGYDSMGR KAWQYATTLP
AEKLSQIQNP LIKPERYVEH AYNPIHRRYE YDPAGELSRT LDKLRGETQY EYEANGQLLA
RNTGRVVDGE EFRYDAAANR LNFNTSRFDH VKDNRLRQWA NHEYKYDAWG NLIETVVGIV
RWQTFTYDCE NRLVKTETMA DTQVESTSSY QYDSLGRRVA KQSEIKGQTD HKRFLWQGLR
MLREESPGQS SLYIYEPGSY APLARVDEKE GEVENTVYYF HTDQIGTPLE MTDAEGQIVW
QAKYRAWGAV EKLVVNKVEQ NLRFQGQYFD AETGLHYNTF RYYDPEIGRF ITQDPIGLLG
GFNLYQYAPN TNGWIDPLGW TGLDASGRPL SSSQYSVWSS VEMPTEIHGS GRSTHFKYAN
EELYNRTLKS PELKSALPPE VVEHIQPGPR GGFSDRSPPN HSWHHNAQSP KDIELMPRAQ
HKAPGPVQNS LHPNQQGGFK KLQSSAC
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