| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4983 |
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| Symbol | |
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| ID | 3370535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5908301 |
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| End bp | 5910145 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637655352 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_238048 |
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| Protein GI | 66048207 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTAT CCTCACTGTT TACGGCGCAG AACAGACGAC TGTTCAAGCT GACGATGGCC
CTCAAGGGTG GCCAGGAGCT GTTGCTTGAT TCCTTTGCCG GTAGTGAAGG TTTATCGGCT
GATTTCGGGT TTCAACTCGA TCTGATTTCT GATGATGCGA GCGTAAAGCT TAAGTCCGCT
ATAGGGCAGT CCGCGACCAT CGAAATCGAA CTCGCCACCG GAGGCAGCCG TTACATTAAC
GGTCATGTAT TGAGCTTCGG TAACAATGGC AGCGACGGTG GCATGTCGCG CTATTCAGCC
TACATAGGCT CGTGGTTGAG CCTGATTGCG CAGAGGTACG ATTCTCAGAT CTATCAGGAT
CAGACAGTGG AGCAGGTGAT CCGGAAGGTA TTGGGTCGCT ACGATGGGCT TGCGAAGTAC
GAGTTCCGTG TCAATCGCAC GCTCAAGCCA TACAGCTACA TCACCCAATA CCGCGAAAGC
GATAGTCACT TCGTCATGCG CCTGCTGGAG CAGGAGGGTT TGTTCTTCTA CTTTGAGCAT
ACGGCGGACA GCCATACGCT GATCATCATG GACGACTCGA CTGTACTCAC ACCGCTTCCA
GAGCAGCCCC AGGTTCGCTT CCATACAGCT TCTGTAACCG AAACCTCTGA CTCCATCACC
CACTGGAGTT CAGCCCGGGA ATTCCAGGCT GGCAAGATTT CGGTACAAAC CTTCGATTAC
AGGCAGCCAG GAAATCGTAT TCCCGTCACG ATGAACAGCC TTAATCAGCA AGGCGATGTT
CCATCGTATG AAATCTTTGA TTACATGGGG CAGTACACGC ACGGCACGCC CGAAGATGGT
GAGCTCCTCG TGCGTAATCG TATCGAGGCA CTGGAGCTAA AAGGTAAGAC ATTCGTAGGG
TCGAGTAACT GTCGGGCGAT GCGTCCAGGT TACACATTTG AACTGACGCA ACATTACGAG
CATGACACGG GCTCTCCCGA TGATCGGCAG TTCCTGTTAA TGAATATCGA GCATCGCGGC
AGCAATAATT ACACCTCGGG CAGTCAGGCG GGTTACGCCA ATAAAATTTA TTGCGTACGC
AAAAAAATCA AGTTCCGGCC TCAGATGGAT TTGCTCAAGC CAGGCATCTC CGGCCCCCAA
ACCGCCATCG TCGTCGGCCC GCCCGGCGAA GAAATCTACA CCGACGAAAT GGGCCGGGTA
AAAGTGCAGT TCCACTGGGA CCGCTACGGC AAGTTTGACG ACAAAAGCTC CTGCTGGGTC
CGCGTCGCTC AATCCGGCGC AAGTGGCGGT TTTGGTAGCA TGCAGATCCC GCGCGTCGGT
GACGAGGTGG TGGTCGTTTT CCTGGATGGC AACCCTGACC GTCCACTCGT CATGGGCAGT
TTGTATAACA GCCAGAACAC GCCGCCGTGG TCGCTGCCTG CCAACAAGAC CCAGAGTGGT
TTCCTGACGC GTTCGGCCAA GGGGGATGGC GGTACGGCCA ACTTCTTCCG CTTTGAAGAT
AAGGCCGGTG CCGAACAGGT GATCATGCAT GCCGAGCGCA ACATGGACAC AGAGATCGAG
CTGGATGAAA AGCACGAGGT GGGCAATAAC CGCAAGGTGA CGGTCGGCGG CACGAATACG
GAAATCATCC AGAAAGATAC TGTGACGAAC GTGCAGCAGG GGTCGTTTAC GCTAAAGGTC
GACAACCAAT TCATTCAGGT GGATGCCAAG CAGTACATCC TTCTCAAAGT GGGCGACAGC
AGCATCTCGA TCACTCCGGA AGGCATTCAG ATAAAAGGCA AAGTGATCAA TGTTCTTGGC
GAGAGCACCT TCGTCAAAGG TGACCGAGTC GACATCAACA AGTGA
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| Protein sequence | MDLSSLFTAQ NRRLFKLTMA LKGGQELLLD SFAGSEGLSA DFGFQLDLIS DDASVKLKSA
IGQSATIEIE LATGGSRYIN GHVLSFGNNG SDGGMSRYSA YIGSWLSLIA QRYDSQIYQD
QTVEQVIRKV LGRYDGLAKY EFRVNRTLKP YSYITQYRES DSHFVMRLLE QEGLFFYFEH
TADSHTLIIM DDSTVLTPLP EQPQVRFHTA SVTETSDSIT HWSSAREFQA GKISVQTFDY
RQPGNRIPVT MNSLNQQGDV PSYEIFDYMG QYTHGTPEDG ELLVRNRIEA LELKGKTFVG
SSNCRAMRPG YTFELTQHYE HDTGSPDDRQ FLLMNIEHRG SNNYTSGSQA GYANKIYCVR
KKIKFRPQMD LLKPGISGPQ TAIVVGPPGE EIYTDEMGRV KVQFHWDRYG KFDDKSSCWV
RVAQSGASGG FGSMQIPRVG DEVVVVFLDG NPDRPLVMGS LYNSQNTPPW SLPANKTQSG
FLTRSAKGDG GTANFFRFED KAGAEQVIMH AERNMDTEIE LDEKHEVGNN RKVTVGGTNT
EIIQKDTVTN VQQGSFTLKV DNQFIQVDAK QYILLKVGDS SISITPEGIQ IKGKVINVLG
ESTFVKGDRV DINK
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