| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4962 |
|---|
| Symbol | |
|---|
| ID | 3370514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5882205 |
|---|
| End bp | 5886137 |
|---|
| Gene Length | 3933 bp |
|---|
| Protein Length | 1310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637655331 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_238027 |
|---|
| Protein GI | 66048186 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAT TACTGCGCCT GTTAAAAAGT TTCTGGTTCC TGGTCCCGAT ACTGTGGCTG
ATCAGCCTGG CTGTCTGCTG GTTTTTCGCC CCAAGGATCA GTTGGCTGCA AGGCTACACG
CTCGAAGCGA TGGCGATCAT CAGCGCCTTT TACCTGCTGC TGATCGTACT GCGCCAATAC
CGCCGGATTC GCACCGAACA CAACCTCGAG AATCTGGTTC AGATCGAAGT TGACCGCTCG
CTGAAGTCCA CTGGCGAGTT CCGTGATCAG CAAGTGCTGC GCGACCGCCT CAAGCATGCC
ATTGCCATGC TGCGCACCGA TCGTTCGGCA GGCGGCGGCG GCTCCTCGGC GCTCTACGAT
CTGCCCTGGT ATCTGGTCAT CGGCATGTCC GCAGCGGGCA AGACCTCGCT GCTGACCCGC
TCCGGCCTGT CGGCCAGCAT TGCCAGCAGC GCCAATGACA CGGAAAGCGG CACCCAGCAC
TGCGACTGGT ACTTCAGCCC TGAAGCCGTG ATGATCGACA CCGCTGGCCG CTACCTTCGC
GATGATCAGT CCGCCAGCGA ATTCGCGGCG TTCCTGCGCA TGCTCAAAAA GCAGCGCAGC
AAGGCCGCCG TCAATGGTCT GGTGCTGGTG GTCAGCCTGC CGGAACTGTT GGCCGCTTCT
TCCGCCGAAC GTAACGAAAT GGGTGCGCGC CTGGTCACGC GCATCGAGGA ATACACCGAT
TGCCTGGACG CCAATCCACC GATCTACCTG ATGCTGACCA AGACTGACCA ACTGCCCGGC
TTCAACCAGG CCTTCGACGG CATGGACCTG AACGAGCGCC AGCAGCCGCT GGGCATGACG
TTCGGGCTGA ACGAGATCAA CACCGAAAGC CTGCGCACGG TGCTCGATCG CAAGCTGGCG
AACCTGCAGG CGCATGTCAG TCGCCATGTC GATGCACAGA TCATCGCGCT GGGTGCCGAT
GCCAACAGCG CCCTGCTGAA CTTCCCCAAC TACTTTGCCG AGCTGTCGGC GATACTCGAG
CAGTTCCTGC AGCATTTCGC GCGCAGTAAC GTCAACGGTA CTCAGTTGTT GCTGCGCGGC
CTGTATTTCA CCAGCGCCCT GCAAACCGAC AAGCAACTGA CACCGGTGTA TGAAGACGAG
CTTTCAGAGT CGTTCGTCCT GCGTCCGGCG AAGCCATACG GTGCAGTGGA GGAAGAGGAA
GAGGAGGAAG AACACCGGAA AATCAGTGAT CGCAGTTACT TCATCACCGA CACCTTCCGC
CGCGTCATTT TCCCTGACCG TGACCTGACC CTGTACCAGT CACGGCATGG CCGCGACCGC
TCTATTGGCC CGATCGTCAT CGCTGCGGCG CTGTTCGCCG GGCTGGCCTT CATCGGCTGG
CAAGCCCTGT CGTTCCAGAA AAACCGCGAG TGGCTGGCCA ACATCAGCCA GCAGTTGCGC
GAACTGGAGC AGTCCCCGGA CCGGGCACAA CGCCTTGCCT CGGGCCAAGG CCTGGAGCTG
CTGCGCAATC AGCTGGCAAC CATCGAGAAA TACCGCACCA AGGGCGTACC GCTGCAACTC
AGCGGCGGCC TGTACCGTGG CGACGATATC TACTTCGCCA CCCAGACCGC CTACCTGCAG
CAACTGCGTA CCCAGGCGCT TGAGCCGATC ACGCTGAAAC TGCAATTGCA GATGCGTGAA
TTCAACGAGT TCGCCAAAAC CATGGACCCG CAGTATGGCT TCGGGGCCGC TCCCGCCGGT
TCCGACAGCA AAACCGGCAA GGCGCGTGCG CAAGGCCGGA AACTGCTGGA CCGTGGCGCT
CGCAACGTCG CGGCAGGCCG TCCGACCAGC CTGAGCAGCA TTCCGCGCAG CACCGGCGAC
GTGACCAATC GCCTGACCGG CGCCGCGAGA AACACGGCCA GCCAGACACG CAGCGAGGCC
ATCGCCGCAC TGCGTAACCC GGCCACCGCA AACGATGCGG CCGAGTTGTC GGCCACCACG
GGCGGTCTGT CGCTGTCGGA AGAGATGCTC GGACGACTCG ATGAACGGCA GGTGGCATCC
ATCATCGAGT CATACAACGC TCTCAAGCTT TATCTGATTC TGACTCAGCC GACCACGCAC
CCGGAAACCG AGTTCGTCAA CGCGGCGTTG CCGGTGGCCT GGGCGGATAT TTCCAGCGAG
GCCAATCCGA TCAGCGACGA CGTCATCGAG GACAACTCGC CGGTCTATGT ACAGTTGCTC
AAGAACGGCG ACGCGCCGGC CATGCCGCGC AATGAGCAGT TGATCGACGA GACCCGCAAG
AGCCTGAAGT TTTTCATGAT CTCCAGCTCG CTGGTGGACC GTGAATACCT GCGCCTGCAA
CTGGAATCCA GCCGTCAGTT CCCCGCTATC GGCCTGAATG ATCTGGTGCC GATGCCGGGT
CGTCAGTTGC TGTACGGTTC GGAAGCCGTG CCTGCGATTT TCACCCGTCA GGGCTGGGAA
GAGTTCGTGA AGCCCGAGCT GATCAAGCTG GTGTCCGGCA ATCTGCGCAA CGAATCGGAC
TGGGTGCTCG ACGGTGAAGG CGGCGACAGC GTGGTGCAGA AAGCCAACTT CGTCCGTGAG
TTCATGTCCC GTTACAAGCG TGACTACACG AAAGTCTGGT ACACCATGAT CGACAGCGTG
GGCGTACGTC GCTTCAGCGA CATGGCCAAC GCCACGCAGC AGTTGTCATT GCTCAGTGAC
GTGCGCAATT CGCCGGTCAA GCTGCTGTTG GCCTCAGTCA ACGACAACAC GCAATGGGAC
GTCCCTGCAG TTCGCGAGGC GCAACAGACC GGGGTCAAGC GCGACGATGG CTTCTGGGGC
AAGGTCACCG GCATCTTCGA CAACAAGGAA GCGGCTGCCA GCGTACTGGT CTCGCCGCTG
CCTGCAGTGG ATGACGGCAG TCTGGCCAAG CGCTTCGAGC CTGTATCGCG GGTTTTCGCC
ACACAGAACG CCGAAGGCGC CGACAGCACC ATCATGGATC GCTACCTGGC AGCGCTGCGT
AAGCTCAAAG TGCGGATGAA CAACATCCAG CGCTCGCAGG ATGTCGGCAA GAGCAGCAAG
CAGTTGATCA GCGAAACCCT CGAAGGGCAG CCGAGCGAAG TCACCAACGT GCGTAACTAC
GTTGAAACCA CGGTCGATAC CAGTCAGGGC GGGCTTTCCA CTTCGCTGCA AAGCCTGTTC
AGCCTGCCGA TTCAGTTCGC CTGGGAAACG CTGCGTGATC CGGCTGGCGA ACAGATCGCC
AAAGCCTGGG CCAAACAGGT CGCCAAGCCC TGGGAACAGG TCATGGCTCA CCGGTACCCG
ATTGCTGCGG ACAGCCGCAA CGAGGCCTCG GTGAAAGACC TGCAGCGTTT CGTCGACCCG
GAGTCGGGCC TGCTGCCCAA CTTCAAACGC AATGAAATCG GCAACCTGTC CGATGGCGAA
GGGCTCGGCA TGGGCAGTGG TGCCAAGGCG GCGCCGCTGG TCAACCCGAA AATGGTCAGC
AACATCGACA AGGCCAGTTC GCTGGGCGAA GTCATCGCCA GCCTCTCGGA CCGCGACAAC
GGCTTCGAGA TCATGCTTGA GCCGTCGGCC TACTTCACCG ATATCATCTT CACGCTGGAT
GGCCAGGAGC AGCACTACCG CAACGGCAAG ACCAGCTGGA GCCGCTTCTC GTGGCCTGGC
ACTACCACAG CGCCAGGCGC ACGCCTGGAT GTGGTCACCC TGTCAGGCGA ACGCATTACC
GTGTTCGACT ACACCGGCCG CTGGGGCCTG CTGCGCATGA ACGACAGCGC ACGCGTCGCT
GACCTCGACG GCATCCAGCA GCGATTCAGC TGGAACACGG CCAAAGGGCC GGTCAGTCTG
GTGGTACGCA ACTATGGCGG CGTGAAGCTG ACCGACCTGG CCAACGTCAA GGCGCTGAGC
GCGCTTAACG CAACCGATGG GCGGACCAAG TGA
|
|---|
| Protein sequence | MKTLLRLLKS FWFLVPILWL ISLAVCWFFA PRISWLQGYT LEAMAIISAF YLLLIVLRQY
RRIRTEHNLE NLVQIEVDRS LKSTGEFRDQ QVLRDRLKHA IAMLRTDRSA GGGGSSALYD
LPWYLVIGMS AAGKTSLLTR SGLSASIASS ANDTESGTQH CDWYFSPEAV MIDTAGRYLR
DDQSASEFAA FLRMLKKQRS KAAVNGLVLV VSLPELLAAS SAERNEMGAR LVTRIEEYTD
CLDANPPIYL MLTKTDQLPG FNQAFDGMDL NERQQPLGMT FGLNEINTES LRTVLDRKLA
NLQAHVSRHV DAQIIALGAD ANSALLNFPN YFAELSAILE QFLQHFARSN VNGTQLLLRG
LYFTSALQTD KQLTPVYEDE LSESFVLRPA KPYGAVEEEE EEEEHRKISD RSYFITDTFR
RVIFPDRDLT LYQSRHGRDR SIGPIVIAAA LFAGLAFIGW QALSFQKNRE WLANISQQLR
ELEQSPDRAQ RLASGQGLEL LRNQLATIEK YRTKGVPLQL SGGLYRGDDI YFATQTAYLQ
QLRTQALEPI TLKLQLQMRE FNEFAKTMDP QYGFGAAPAG SDSKTGKARA QGRKLLDRGA
RNVAAGRPTS LSSIPRSTGD VTNRLTGAAR NTASQTRSEA IAALRNPATA NDAAELSATT
GGLSLSEEML GRLDERQVAS IIESYNALKL YLILTQPTTH PETEFVNAAL PVAWADISSE
ANPISDDVIE DNSPVYVQLL KNGDAPAMPR NEQLIDETRK SLKFFMISSS LVDREYLRLQ
LESSRQFPAI GLNDLVPMPG RQLLYGSEAV PAIFTRQGWE EFVKPELIKL VSGNLRNESD
WVLDGEGGDS VVQKANFVRE FMSRYKRDYT KVWYTMIDSV GVRRFSDMAN ATQQLSLLSD
VRNSPVKLLL ASVNDNTQWD VPAVREAQQT GVKRDDGFWG KVTGIFDNKE AAASVLVSPL
PAVDDGSLAK RFEPVSRVFA TQNAEGADST IMDRYLAALR KLKVRMNNIQ RSQDVGKSSK
QLISETLEGQ PSEVTNVRNY VETTVDTSQG GLSTSLQSLF SLPIQFAWET LRDPAGEQIA
KAWAKQVAKP WEQVMAHRYP IAADSRNEAS VKDLQRFVDP ESGLLPNFKR NEIGNLSDGE
GLGMGSGAKA APLVNPKMVS NIDKASSLGE VIASLSDRDN GFEIMLEPSA YFTDIIFTLD
GQEQHYRNGK TSWSRFSWPG TTTAPGARLD VVTLSGERIT VFDYTGRWGL LRMNDSARVA
DLDGIQQRFS WNTAKGPVSL VVRNYGGVKL TDLANVKALS ALNATDGRTK
|
|---|
| |