| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4959 |
|---|
| Symbol | |
|---|
| ID | 3370511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5879369 |
|---|
| End bp | 5880124 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637655328 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_238024 |
|---|
| Protein GI | 66048183 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.261667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA GACTTCAAGG CAATTGTTCC TCGAAGCCAG CCTTGGCAAG GTGCCTGGCT
GTTCTGGCAA TGATGATGGC TCTGTCCGCC TGCGGCGTGA CAGACCGTGT CGCCAAGCGC
ATGGATGACA CCTGGGCTGG CGACATGATG TTCGGTGACA ATGAAAAGGT CATCCTGACG
ACTGACGGCG GCAACCAGCT CAACCCCGAC GAGTACGGCA AACCGCTCTC GGTGGTGGTG
CGCGTTTATC AACTGTCCTC TCTGGAGCGC TTCGAGTCGA TCAACGCCGA CACTCTCTGG
GAGGATCCGC AAAAGGCTCT GGGCAACACG CTGGTCGAGA GCCGGGAGCT GATTCTGTTG
CCTGGCATGG GCCAGACCGA TCAGTGGCCG CTGAACCCGA ATGCCTCGTA TGTGGGCATC
GCGGCGTTCT TCCGCACCGA CGTCGACAGC CGCTGGAAGG TCGCGTTCGA CGCCAACACG
CTGCGCAAGG ACGGTATCTG GTTCTCGTCC GACGGCGTGC GTGTGCTGGT GGATAACAAC
TACATCCTCG CGGTGCGTGG TGTGGACGTG CTGAACAAAC TCAAGACTGA AGAGCAGTTC
AACAAATCCA ATTCGATTCC CGAACAACCC GCCAGTAAAA GTATGACCGA GCGCGCGCAG
GACGCAGCTG TCCAGCAGGT TCAGGACTCG GCCGGCAGTG CTGCCAAAAA GGCAGCTGAC
TCACAATTCA ATTCTCTGTT GGAAGGCGCC AAATGA
|
|---|
| Protein sequence | MNKRLQGNCS SKPALARCLA VLAMMMALSA CGVTDRVAKR MDDTWAGDMM FGDNEKVILT
TDGGNQLNPD EYGKPLSVVV RVYQLSSLER FESINADTLW EDPQKALGNT LVESRELILL
PGMGQTDQWP LNPNASYVGI AAFFRTDVDS RWKVAFDANT LRKDGIWFSS DGVRVLVDNN
YILAVRGVDV LNKLKTEEQF NKSNSIPEQP ASKSMTERAQ DAAVQQVQDS AGSAAKKAAD
SQFNSLLEGA K
|
|---|
| |