| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4909 |
|---|
| Symbol | |
|---|
| ID | 3370460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5821554 |
|---|
| End bp | 5822945 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637655277 |
|---|
| Product | GABA permease |
|---|
| Protein accession | YP_237974 |
|---|
| Protein GI | 66048133 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTA CCGCTAACTC TTCCGAGCTC GAACAAGGGC TGAAACCTCG ACACATTACG
ATGCTGTCGA TTGCTGGCGT GATTGGCGCC GGGTTGTTCG TCGGCTCCGG CCACGCGATT
GCCGAAGCCG GTCCTGCCGT GCTGCTGGCG TATGCCGCGG CGGGTACGCT GGTGGTACTG
GTGATGCGCA TGCTGGCCGA AATGGCCGTT GCCTCGCCGG ATACCGGTTC GTTTTCAACC
TATGCCGACC GCGCTATCGG TCACTGGGCC GGTTTCACCA TCGGCTGGCT GTACTGGTGG
TTCTGGGTGC TGGTGATTCC ACTGGAAGCC AACGCCGCTG CAACCATTCT GCATGCCTGG
TTCCCCAATA TCGCGATCTG GGTGTTCACG CTGGTCATCA CGCTGGTGCT GACGGCAACC
AACCTGTTCA GCGTGAAGAA CTACGGTGAA TTCGAGTTTT GGTTCGCGCT GATCAAGGTG
GTGGCGATCA TCGCCTTCGT GGTGCTGGGT GTTGCGGCGA TCTTCGGTCT GCTGCCCACC
AGCAACGTCA GCGGTGTCAG CCACCTGTTC GATACCGGCG GCTTCCTGCC AAACGGTATG
GGCGCGGTGC TGGCGGCAAT GCTGACCACC ATGTTCTCGT TCATGGGCAC CGAGATCGTC
ACCATCGCCG CGGCCGAGTC CAAGAACCCT GGCAAGCAGA TCACCAAGGC CACCAATTCG
GTGATCTGGC GGATCTTCCT GTTCTATCTG GTTTCGATCT TCATCGTTGT GTCGCTGGTG
CCGTGGAACG ATCCGCGCCT GGCCGAGGTG GGTTCGTATC AGACCGTGCT CGATGCAATG
GGCATTCCGA ACGCCAAGCT GATCGTCGAC CTGGTGGTCC TGGTCGCCGT GACCAGCTGC
CTGAACTCGG CCCTGTACAC CGCTTCGCGC ATGCTGTTCT CGCTAGGCAA GCGCGGCGAT
GCACCGGCCG TGTCCAAGCG CACCAGCAAG GGCGGTACGC CTCACTGGGC GGTGATCATG
TCGACTGCGG CGGCTTTCCT GACTGTGTTC GCCAACTACA TCGCGCCGGC GGCCGTGTTT
GATTTCCTGC TCGCCAGCTC CGGTGCCATC GCACTGCTGG TGTACCTGGT GATCGCGGTG
TCGCAGCTGC GTATGCGCCA GAAGCGCATC GCTGCGGGCG AGGCCATCGA CTTCAAGATG
TGGCTGTTCC CGTGGCTGAC CTGGGCAGTT ATCGCGTTCA TCGTCGCGGT GCTGACCATC
ATGCTGCTGC AGGAAGAGCA TCGCCTCGAA ATCATCGCCA CCGGCGTGCT CAGCCTGTTG
GTGATCGGCG CTGGCATGAT CGTATCGCGT CGCCGCAAGG ACGGTCGCGT CGGCGCTGCT
GCGCTGGGTT GA
|
|---|
| Protein sequence | MSSTANSSEL EQGLKPRHIT MLSIAGVIGA GLFVGSGHAI AEAGPAVLLA YAAAGTLVVL
VMRMLAEMAV ASPDTGSFST YADRAIGHWA GFTIGWLYWW FWVLVIPLEA NAAATILHAW
FPNIAIWVFT LVITLVLTAT NLFSVKNYGE FEFWFALIKV VAIIAFVVLG VAAIFGLLPT
SNVSGVSHLF DTGGFLPNGM GAVLAAMLTT MFSFMGTEIV TIAAAESKNP GKQITKATNS
VIWRIFLFYL VSIFIVVSLV PWNDPRLAEV GSYQTVLDAM GIPNAKLIVD LVVLVAVTSC
LNSALYTASR MLFSLGKRGD APAVSKRTSK GGTPHWAVIM STAAAFLTVF ANYIAPAAVF
DFLLASSGAI ALLVYLVIAV SQLRMRQKRI AAGEAIDFKM WLFPWLTWAV IAFIVAVLTI
MLLQEEHRLE IIATGVLSLL VIGAGMIVSR RRKDGRVGAA ALG
|
|---|
| |