| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4852 |
|---|
| Symbol | |
|---|
| ID | 3370402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5759127 |
|---|
| End bp | 5760356 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637655219 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_237917 |
|---|
| Protein GI | 66048076 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA CTTCCCTCGA CAAGAGCAAG ATCAAGTTCC TTCTTCTCGA AGGCGTCCAC
CAATCCGCTG TCGACGTCCT CAAGGCAGCC GGTTACACCA GCATCGAGTA CCACACCAAG
TCTCTGCCGG AAGCCGAACT GAAAGAAAAG ATCGCCGACG CCCATTTCAT CGGTATCCGC
TCTCGTACTC AGTTGACCGA AGAGCTGTTC GATTGCGCCA AGAAACTGGT TGCGGTCGGC
TGCTTCTGCA TCGGCACCAA CCAGGTTGAC CTCAACGCGG CGCGCGAGCG CGGTATCGCA
GTGTTCAATG CGCCCTACTC CAATACCCGT TCGGTCGCCG AACTGGTATT GGCCGAAGCC
ATCCTGCTGC TGCGCGGTAT CCCCGAGAAG AACGCTTCCT GCCACCGTGG CGGCTGGATC
AAGAGTGCGG CCAACTCCTT CGAGATCCGT GGCAAGAAGC TGGGCATCAT CGGTTATGGT
TCGATCGGTA CGCAGCTGTC GGTGCTGGCC GAAGGTCTGG GCATGCAGGT GTACTTCTAC
GACACGCTGA CCAAACTGCC GCTGGGCAAC GCCACTCAGG TGTCGAGCCT GAACGAGCTG
CTGGGCATGT CCGATATCGT CACTCTGCAC GTTCCGGAAA CCTCGGAAAC CCAGTGGATG
ATCGGCGAGA AAGAAATCCG CGCGATGAGG AAGGGCAGCA TCCTGATCAA CGCCGCGCGT
GGCACGGTGG TCGAACTGGA CGCACTGGCT GACGCCATCA AGGACAAGCA CCTGATCGGC
GCCGCCATCG ACGTGTTCCC GGTCGAGCCG CGCTCGAACG ACGACATCTT CGAAAGCCCG
CTGCGCGGTC TGGACAACGT GATCCTGACG CCGCACATCG GTGGCTCCAC AGCCGAAGCG
CAGGCCAACA TCGGTCTGGA AGTGGCGGAA AAACTGGTCA AGTACAGCGA CAACGGTACG
TCGGTGTCCT CGGTCAACTT CCCGGAAGTG GCGCTGCCTG CGCACCCTGG CAAGCACCGC
CTGCTGCACA TCCACGAAAA CATCCCGGGC GTGCTCAGCG AGATCAACAA GGTCTTCGCC
GAAAACGGTA TCAACATCTC CGGTCAGTTC CTGCAGACCA ACGAGAAAGT CGGCTACGTG
GTCATCGACG TCGACGCCGA ATACTCCGAC CTCGCCCAGG CCAAGCTGCA ACAGATCAAA
GGCACCATCC GCAGCCGCGT GCTGTTCTGA
|
|---|
| Protein sequence | MSKTSLDKSK IKFLLLEGVH QSAVDVLKAA GYTSIEYHTK SLPEAELKEK IADAHFIGIR
SRTQLTEELF DCAKKLVAVG CFCIGTNQVD LNAARERGIA VFNAPYSNTR SVAELVLAEA
ILLLRGIPEK NASCHRGGWI KSAANSFEIR GKKLGIIGYG SIGTQLSVLA EGLGMQVYFY
DTLTKLPLGN ATQVSSLNEL LGMSDIVTLH VPETSETQWM IGEKEIRAMR KGSILINAAR
GTVVELDALA DAIKDKHLIG AAIDVFPVEP RSNDDIFESP LRGLDNVILT PHIGGSTAEA
QANIGLEVAE KLVKYSDNGT SVSSVNFPEV ALPAHPGKHR LLHIHENIPG VLSEINKVFA
ENGINISGQF LQTNEKVGYV VIDVDAEYSD LAQAKLQQIK GTIRSRVLF
|
|---|
| |