| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4805 |
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| Symbol | |
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| ID | 3370355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5697437 |
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| End bp | 5701126 |
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| Gene Length | 3690 bp |
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| Protein Length | 1229 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637655172 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_237870 |
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| Protein GI | 66048029 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.739306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.809733 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGAGG CAGCGCGGTT ACTGGATGAG ATCGAACACA CCGGGGCAAT GGCGGGCTTT
GTGCTCGGAG CGATTGTGGG CATCGCGGCA GTGGCGTATG TCTCGCTCAC CGTCGCCACG
TGCGGGTTCG GCGGTTTTTT ACTGGCCATG GCGGTCGGTC TGGCCGGTAA TGCCATTGCC
AGCATCGGGG AGAGTATCGG CAGCGCCTTC AGCTCTCCGG CGGGGCAGAT CGAATCTGCC
TCGCCCAATG TGTTCATCAA CGGTAGACCC GCGGCCTTTG CCATCGAAAG CACCGCCGTG
TGTGACAAGC ACTCGCCGAT CGTCAAGGTG GCCGAAGGCT CCAGCAACGT CTTCATCAAT
GGCCAGCCCG CCGCACGCAA GGGCGACAAG CTGACCTGCG GCGCGAAGAT CGGCACCGGC
TCGCCCAACG TCTTCATCGG CGGCGGTACC CAACGCTACC TGCCGGTGGA TGACGAAGTG
TCGGCGATGG CCCGCTACAC CGTGGACATT CTGTTGGTCG TGGCCGGCGG CGCCAAGGCC
GTGCTCAGCA TTGCCAAGCT GGGCATGCAG GCCGGTCTGA AAGCGGCAGG CCCTTGCGCG
CTGCAGTTCA TGGGCGGTGT CTTTCTCGGG GACGCCATTT TTCGCTTCGG CGTCGCCCCC
GTGGCCGAAA AAGTGCTGGG CGGCCTGCAC GGTAATCCGG TCGACACCAC CACCGGACGC
AAACTGCTGA TCGACGAGTC CGATTTCAGC CTGCCCGGCC TGATGCCGAT CGAGTGGACA
CGCTTCTACG CCAGCGACCT TGATGTCGAC AGCGCGCTGG GCAAAGGCTG GGTGTTGCCC
TGGGAACAAA GCCTGCGGCG CAAGGGCAGC TTTCTGTACC TCAGCGACAA TCAGGGCCGC
AGCGTGCCGT TCGTGACACT GGACTACAAC CAGCGCATCT ACAACGCACA GGAACAGCTG
TACCTGGTGC GTACCGAAGG CGGTCATTAC CTGCTGCAAA CGCTGGATAA CGTCTTTTAC
TACTTTGGTG AAGTGCCCGA CGACAACCAT CCTGTTCCCC TGCAACGCGT CGAAAACGCC
CTCGGTCATT TTCTGCATTT CGTGCGCAGC GAAGACGGCG TTCTGACCGA CATCTGCGCC
ACCGGCGGGC ATCGTGTGCA CCTGCACTAC GACGAGGTGA ACAGCCGCCT GAGCACCGTC
AAGCGGATCG TCGGCGACCA GGCCGTCGAG ACGCTGGTGC GCTATGGCTA CGACAACAAT
GGCCAGCTGA ACAGTGTGTA CAACCGCAAT GGCGACTCGG TGCGCAACTT CAGCTACACC
GATGGCCTGA TGACCCGCCA CGCCAATGCG CTGGGGCTCA GTTGCGAATA CCGCTGGGAA
GTTCTCGACG GCAAGCCGCG CGTGGTCGAG CACTGGACCA GCGACGGCGA GCACTTTCAT
TTCGATTATG ATTTCGAGGC GCGCCAGACG CGCATAACCG ATGTGCTGGG TCGTCGCGCC
GAGGTGACCT ACAACAAGGA CCGTCGCGTC ATCGCCAGCA CAGATTTCGG CGGTGAGCAG
TACCGTATCG CGCTGGACAA CACCGGCAAT ATCACCGGTC TGACGCTGCC TGACGGCAAT
CAGCTGGGCT TCGAGTACGA CGATCTGTCA CGCCTGACCG CAGAAACCGA CCCGCTGGGC
CGAACCACCC GTTATCAGCA TCACTACAAG ACCACGCTGG TCAAACAGAT CACTTACCCT
GACGGCGCCG TCTGGACGGC CCGCTACGAT TCGAAAGGCA ATCTGGTTGC CGAGATCGAC
GCGCTGGGTC AAAAGACCGA ATACCTCAAC AGCGAAGATG GCCTGCCACA CACCATCATC
GATGCGACCT ACAAATCCAA ATACCTGTGG TGGAACAACC TGGCGCAGGT CGAGCGCTTC
CAGGACTGCT CGGGCAAGAG CACCTGGTAC CGTTACGACG AGCGCGATCA ACTGGTCGCC
GTCACTGATG CCCTGAACAA CACCACCACA CTGGAACGCA AACCCGGCGG CGAAGTGCTG
AGCATCAACC ATCCGGACGG CACCCGCGAG AGCTTCACCT ACAACGCCCA CGGCCAGGTG
CTAACGCACA CCAACGGCAA GGACCAGACC ACGCACCTGG CGCGCAACGC CCGTGGCCTG
CCGATCAGAC GCCAGGACCC CAAGGGTTTG ATCGTAGGCT ACCAGTACGA CAAGGCCCTG
CGTCTTGCCG CGCTAATCAA TGAAAACGAC GCCACCTACA CGTTCGCCTA CGACGACTCC
GACCGGCTGA TCGAAGAAAA GCGCATCGAC CAACTGACCC GCCGTTTCAG CTACAACCTC
GGCGGTCACC TGACTCAGGT CGAGGAAATC GGCTACAGCG AGAAAGGTGA GCGACCACAG
CGCAGCACGC ATTTCGAGCG CGACCCGATT GGCCGTTTGC TGGCCAGGCT CAACGACGAC
GCCCGCCAGG ATTTCACCTA CGATGACAGC GACCGCCTGC TGTCCATTCA GCGCACACCC
ACTGACGGCG GCAGAAAACT CGGTGTCACG GCTGAAAAAC TGGAATTTGC CTACGACATT
CTGGGCCGCC TGACACAGGA ATCGTCGCCT AAGGGCACGC TGGCCTACGA GTACGATCCA
CTCAGCAACC TGACCACGCT GACCCTTCCC ACCGGCCAGC ACCTGAACCA CCTGTATTAC
GGCAGCGGTC ACCTGCACCA GTTGAACCTC GATGGCCAAC TGATCAGCGA CATGGAGCGC
GACGACCTGC ACCGCGAGAT CTATCGCACC CAGGGCAAAC TCACCAGTTG CTTCGGCTAT
GACGCTCTGG GGCGCAAGAC CTGGCAGTAC GCAACCACCC TGCCCGCGGA AAAACTGTCA
CAGATCCAGA ACCCGCTCAT AAAGCCAGAG CGTTACGTCG AGCACGCCTA CAACCCGCTC
CATCGCCGCT ACGAATACGA CCCGGCCGGC GAACTGAGCC GCACCCTCGA CAAACTGCGT
GGCGAAGTCA CCTACGAATA CGAAGCCAAC GGCCGCCTGC TTGAGCACAA CCCCGAAAAA
CGTTTCGACG GCGAAGAATT CCGCTACGAC GCCGCTGGCA ACCGCCTCAA CTTCAACACC
AGCCGCTTCG ACCGCGTCAA AGACAACCGC CTCAAAAAGT GGAGCAACCA CGAATACAAG
TACGACGCGT GGGGCAACCT GGTCGAGAAA ATCGTCGGCA TCGTGCGCTG GCAAACCTTC
ACCTACGACA GCGAAAACCG CCTGGTCAAA ACCGAGACCA TGGCCAACAG CCAAGTGGAA
AGCACCAGCA GCTATCAGTA CGACAGCCTG GGTAGGCGTG TTGCCAAACA GTCCGACATT
AAGGGCAAGA CCGACCATCG ACTATTTCTC TGGCAAGGTC TTCGCTTGCT GCGTGAAGAA
AGTCCGGGAC AGAGCAGCCT GTATCTGTAC GAGCCCGGCA GTTATGCGCC GCTGGCCCGT
GTTGATGAGA AAGAGGGCGA GGCAGAGAAC AAGGTCTACT ACTTCCACAC CGACCAGATT
GGTACGCCGC TGGAGATGAC CGACGCCGAA GGGCAGATCG TCTGGCAGGC CAAATATCGG
CCGTGGGGTG CGGTTGAGAA GCTGGTGGTG AACGACGTCG AGCAGAACCT GAGGTTTCAG
GGGCAGTATA TGGAAATTTT GGTTAGATAA
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| Protein sequence | MFEAARLLDE IEHTGAMAGF VLGAIVGIAA VAYVSLTVAT CGFGGFLLAM AVGLAGNAIA
SIGESIGSAF SSPAGQIESA SPNVFINGRP AAFAIESTAV CDKHSPIVKV AEGSSNVFIN
GQPAARKGDK LTCGAKIGTG SPNVFIGGGT QRYLPVDDEV SAMARYTVDI LLVVAGGAKA
VLSIAKLGMQ AGLKAAGPCA LQFMGGVFLG DAIFRFGVAP VAEKVLGGLH GNPVDTTTGR
KLLIDESDFS LPGLMPIEWT RFYASDLDVD SALGKGWVLP WEQSLRRKGS FLYLSDNQGR
SVPFVTLDYN QRIYNAQEQL YLVRTEGGHY LLQTLDNVFY YFGEVPDDNH PVPLQRVENA
LGHFLHFVRS EDGVLTDICA TGGHRVHLHY DEVNSRLSTV KRIVGDQAVE TLVRYGYDNN
GQLNSVYNRN GDSVRNFSYT DGLMTRHANA LGLSCEYRWE VLDGKPRVVE HWTSDGEHFH
FDYDFEARQT RITDVLGRRA EVTYNKDRRV IASTDFGGEQ YRIALDNTGN ITGLTLPDGN
QLGFEYDDLS RLTAETDPLG RTTRYQHHYK TTLVKQITYP DGAVWTARYD SKGNLVAEID
ALGQKTEYLN SEDGLPHTII DATYKSKYLW WNNLAQVERF QDCSGKSTWY RYDERDQLVA
VTDALNNTTT LERKPGGEVL SINHPDGTRE SFTYNAHGQV LTHTNGKDQT THLARNARGL
PIRRQDPKGL IVGYQYDKAL RLAALINEND ATYTFAYDDS DRLIEEKRID QLTRRFSYNL
GGHLTQVEEI GYSEKGERPQ RSTHFERDPI GRLLARLNDD ARQDFTYDDS DRLLSIQRTP
TDGGRKLGVT AEKLEFAYDI LGRLTQESSP KGTLAYEYDP LSNLTTLTLP TGQHLNHLYY
GSGHLHQLNL DGQLISDMER DDLHREIYRT QGKLTSCFGY DALGRKTWQY ATTLPAEKLS
QIQNPLIKPE RYVEHAYNPL HRRYEYDPAG ELSRTLDKLR GEVTYEYEAN GRLLEHNPEK
RFDGEEFRYD AAGNRLNFNT SRFDRVKDNR LKKWSNHEYK YDAWGNLVEK IVGIVRWQTF
TYDSENRLVK TETMANSQVE STSSYQYDSL GRRVAKQSDI KGKTDHRLFL WQGLRLLREE
SPGQSSLYLY EPGSYAPLAR VDEKEGEAEN KVYYFHTDQI GTPLEMTDAE GQIVWQAKYR
PWGAVEKLVV NDVEQNLRFQ GQYMEILVR
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