| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4802 |
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| Symbol | |
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| ID | 3370352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5691982 |
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| End bp | 5693256 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637655169 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_237867 |
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| Protein GI | 66048026 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters)
[TIGR01730] RND family efflux transporter, MFP subunit |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.838463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00074061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACAACA AACGAAGCAT TGCCATCGCG CTGGCGGTGG TGGTCATCAT GGGTCTGGGC
AGTCTGACCC TGAACCCGCA GATGCTGCCG TTCGCAGCCG GACCCAAGCC ATCGGCCGAG
GAGCACGCGC ATGACGCCGA GCAGGGGCAC TCTGAAGAGC CAGGCCACGC CGACGAGCAG
GGCCACGGCA ACGAGGCGAA AAAACCGGAT GCCGCAGCCT CCGAGTCTTC CCATGAAGAA
GAGGAAGAAG GACACATCGA GCTGACCGCC GAGCAGATCA AGGCGGCAGG CATCGAGCTG
ACCAGCGCAG AACCCCGGCA GATGAGCACG ACCGTGACCT TCCCCGGTGA AATCCGCTTC
GATGAAGACC GCACTGCGCA TGTCGTGCCG CGGGTCAGCG GCGTGGTCGA AGCGGTGAAG
GTCGATCTGG GTCAGGCGGT GAAAAAGGGC CAGGTGCTGG CGGTGATTGC CAGCCAGCAG
ATTTCCGATC AACGCAGCGA ATTGAACGCC GCACAACGAC GCCAGGAACT GGCGCGCCTG
ACCTTGCAAC GCGAAAAGAA ACTCTGGGAA GACAGGATCT CGGCCGAGCA GGATTACTTG
CAGGCGCGCC AGGACTTCCA GGAAGCCGAC ATCAACCTCG CCAACGCGCG GCAGAAGATC
AGCGCCATCG GCGCCAGCAC CCATCCTTCA GCGGGAAGCC GCTACGAGCT GATCGCACCG
TTCGATGCCG TGGTCGTGGA AAAGCACCTG GGCATCGGCG AGATGGTCAG CGAGGCGAGC
AACGCCTTCA CGCTGTCCGA CCTGTCGCGT GTCTGGGCCA CCTTCGGCGT GGCGCCCAGG
GATCTGGACA AAGTGGTGGT CGGTCGTCCG GTCATCATCA GTGCGCCCGA CCTGAATGCC
CGGGTCGAAG GACGGGTCGG CTACGTCGGC AGCCTGCTGG GCGAGCAGAC CCGCGCTGCG
GCCGTGCGCG TGACACTGGC CAACCCACAG GGCGCCTGGC GTCCCGGCCT GTTCGTTTCG
GTGGAAGTCG CCGCCGAACA GTCCAGTGTG GCGGTCAGTC TTCCCGAATC GGCGATTCAG
TCGGTCGAGG ACAAGCCCTC GGTCTTCGTG CGCAACGCTG AAGGGTTTCA ACTGACGCCG
GTGACACTTG GCCGCCGCGA TGGTGGCCAC GTGGAAATCG TCAAGGGCCT GGCGGCCGGC
ACACAAGTGG CCACCGCCGG CAGTTTCATC CTCAAGTCGG AGCTGGGCAA AGGCTCCGCC
GAGCACGCCC ATTGA
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| Protein sequence | MNNKRSIAIA LAVVVIMGLG SLTLNPQMLP FAAGPKPSAE EHAHDAEQGH SEEPGHADEQ
GHGNEAKKPD AAASESSHEE EEEGHIELTA EQIKAAGIEL TSAEPRQMST TVTFPGEIRF
DEDRTAHVVP RVSGVVEAVK VDLGQAVKKG QVLAVIASQQ ISDQRSELNA AQRRQELARL
TLQREKKLWE DRISAEQDYL QARQDFQEAD INLANARQKI SAIGASTHPS AGSRYELIAP
FDAVVVEKHL GIGEMVSEAS NAFTLSDLSR VWATFGVAPR DLDKVVVGRP VIISAPDLNA
RVEGRVGYVG SLLGEQTRAA AVRVTLANPQ GAWRPGLFVS VEVAAEQSSV AVSLPESAIQ
SVEDKPSVFV RNAEGFQLTP VTLGRRDGGH VEIVKGLAAG TQVATAGSFI LKSELGKGSA
EHAH
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