Gene Psyr_4801 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4801 
Symbol 
ID3370351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp5690688 
End bp5691914 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content66% 
IMG OID637655168 
ProductOuter membrane efflux protein 
Protein accessionYP_237866 
Protein GI66048025 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00249818 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGAGTCG GCGCACTTTG TCTGATGTTG TTACCGTTCA TTGCTCCGGG CATGGCGATG 
GCCCAGGGCA TCAGTCTGCC TCAGGCACTG GAAGCCGCCT TTGCCCGTAA CCCGGAACTG
GCCGCAGCCC AGTGGGAGAT CGGCGTTGCC GAGGGTGATC GCCAGCAGGC TGGACTGATT
CCCAACCCGA CAGTGTCATG GGAAGTCGAA GACACCCGCC GCGAGACCAG CACCACCACC
GTGATGCTCA GCCAGGCACT GGAACTGGGC GGCAAGCGCG GGGCGCGGAT CGAGGCCGCC
AGCAAGGGTC AGGACGCTGC GCGTCTGGAG CTGGAGCGTC GCGGCAACGA GCTGCGTGCC
GAGGTGGTTC AGGCGTTCTA CGCAGCGGCG CGGGCACAGG CTGGTCTGGA GCTGGCGCGC
CAATCCAGGA CACTGGCCGA ACGCGGCCTT GAGGTTGCCG AAGGGCGAGT CCGGGCGGGT
AAGGTATCGC CGGTGGAAGC CACACGCGCC CAAGTGCAAC TGGCTGAAAC CGATCTGCTG
GTGCGCCGCG CCGAGACCCT GAAAATCAAC AGCAACCGCG AGCTGGCGCG CACCACCGGT
TCGCCGCTCG CCTCTTTCGA ACGTCTGGAC TACAGCGACC TGTCGCCGGG CAAGCTGCCA
CCGAGCGCAA AGCTACTGAC CGCCCTCAAT CAGTCCGCCG AGCTGCGCCT GGCGCAGACC
CAGATCGAGC AGCGCGAAGC CGCGCTGGGG TCGGAACGCG CCAAGCGCAT CCCCGACCTG
ACCGTCAGCG TCGGTAGCCA GTACAGCCGC GAAGAGCGCG AGCGGGTCAA CGTCGTGGGC
CTGTCGATGC CGCTGCCGCT GTTCGACCGC AATCAGGGCA ACGTGCTCGC GGCATCACGC
CGTGCCGACC AGTCACGCGA CCTGCGCAAC GCCGTCGAAC TGAAGCTGCG CACGCAGACG
CAGTCCGCCC TCGATCAATG GACCACCGCC GCGCAGGAAG TCGAGTCCTT TGACCGCGTG
ATCCTGCCCG CGGCGCAACG TGCCGTCGAC ACGGCAACGC GCGGTTTCGA GATGGGCAAG
TTCGGTTTTC TGGAAGTGCT GGATGCGCAA CGGACGCTGA TTTCGGCGCG CAACCAGTAC
CTCGAATCGC TGGCCACCGC CACCGAGGCC AGAGTCGCCA TCGAGCGAAT ACACGGTGAT
CTCAACCGCT TCAGCCTCAA CCCCTGA
 
Protein sequence
MRVGALCLML LPFIAPGMAM AQGISLPQAL EAAFARNPEL AAAQWEIGVA EGDRQQAGLI 
PNPTVSWEVE DTRRETSTTT VMLSQALELG GKRGARIEAA SKGQDAARLE LERRGNELRA
EVVQAFYAAA RAQAGLELAR QSRTLAERGL EVAEGRVRAG KVSPVEATRA QVQLAETDLL
VRRAETLKIN SNRELARTTG SPLASFERLD YSDLSPGKLP PSAKLLTALN QSAELRLAQT
QIEQREAALG SERAKRIPDL TVSVGSQYSR EERERVNVVG LSMPLPLFDR NQGNVLAASR
RADQSRDLRN AVELKLRTQT QSALDQWTTA AQEVESFDRV ILPAAQRAVD TATRGFEMGK
FGFLEVLDAQ RTLISARNQY LESLATATEA RVAIERIHGD LNRFSLNP