| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4770 |
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| Symbol | |
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| ID | 3370320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5646832 |
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| End bp | 5649525 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637655137 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_237835 |
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| Protein GI | 66047994 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0155612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCC AAACCGATGC TGCCGGTAGA TCCGCAGCCG AGGTAGTGAC GCAATTGCCA
GTGCCCTCGC GCCTGGGCAT GCTGCGTTTC GAGCGGCTGA ATGAAGCCAA TTGGGCGCTA
TTGTTTCTCG ATCCAAATTG CGAAAGGCAG TTCGGACTGG CAGCCGTTGA CCTTTGCGCC
TTGATTGGAT CCCCTTATGC CAGCCTCATG GAGCCGGAAG CTCGTTATCA ACTGCACGAT
GACATCCAGC TGCAACTGGC CTCTTCCCCG AATTACCTGA TTCGTTACAC CCTTCACAGC
CCCAAAGGCC CGCTTGGCCT GCTGGAAATC GGCGAAGCCT ACAAACAGCA CAACCGCCAT
CTGTTACGTG GTTATTTTCT GATCGTCGAA GGCCTTGTCA CGACTGGCGA ACCGGTCACG
GACTCCGATC TGGAAACCCG CAACCTGCGA CTGCAGATTG CCCTGGAACT CAACCAGCGC
GCCCAGCGCG ACCAGTTTGC CCACCTGGAG CGCGTGCGCG CCCAGCAGGA TCTGATCCTG
CGCCTGACCC GACATCGCTA CACCACGGCC AATACCCTGC TCGAAGCGGC AGAGCTGATC
ACCAAAAGCG CCTGTGATAT CTACGATGTC GATCATGTCA GCATCTGGAA CCTCAACGAC
AAGCGCCTGG AGCCGATCAC CGACTACAGC CGTGAAACCG GCGACTATCA GTCACGCACG
CCGGTGGATA TCAGCCCCTA CCCCACCTAC CTGCAAGCGC TGAATACCAG CCGGGCGATC
GACGCCAGCA ATATCCAGAC TGACCCGCGC ACCTGCGAAA TGGCCAAAAG CCTGAATCCT
GGAGAAACCA GGGCGGTGCT CGATGCCAGT ATTCGTATCG ATGGCCAGGT GATCGGCGTG
CTGTGCCTGG AAGAGTCCGG CTCGACGCGC GAATGGCAGT CCGACGAGAT CGCCTTCGCC
GGCGAGCTGG CGGACCAGTT TGCCCAGGTC ATCAACAACC ATAACCGTCG GGCTGCGACC
AACGCACTAC ACCTGTTCCA ACGCGCGGTC GAACAAAGCG CCAACGCCTT TCTGCTGGTC
AACTGCAACG GCGTGGTCGA ATACGTAAAC CCGAGTTTCA CGGCGATCAC CCAGTACAGC
TCGGAGGAAG TCTCCGGGCA CAAGCTGTCG GAATTGCCCG CGCTGGAAAA CCTCAACCAG
TTGCTGCTGG AAGCCAACTC CAGCCTGACC AACAGCAACA GCTGGCAGGG CGAGTTCAAA
AGCCGGCGCA AGAACCTCGA ACCCTATTGG GGCCAGCTGT CGATTTCCAA GGTGTACGGC
GACAACCGCG AGTTGACGCA CTATATCGGC ATCTACGAAG ACATCACCCA GAGCAAACTG
GCCCAGCAGC GCATCGAGCG CCTGGCGTAC ACCGACAACC TGACCAACCT GGGCAACCGT
CCGGCCTTTA TCCGCAATCT GGACGAACGC TTTGCCCGCG ACACCGATAC GCCGATGAGC
CTGTTGCTGG TCGACATCGA TAACTTCAAG CGCATCAACG ACAGCCTTGG CCACCAGACC
GGTGACAAAC TGTTGATCAG CCTGGCGCGG CGCCTGCGCA ACACCTTGAG CCCGTCCGAC
ATACTGGCGC GCTTTGCCAG TAACGAATTT GCCGTGCTGA TCGACAACAC CGATCAGGAA
GCCGGGCACG CCACCGCCAC CCAGGTGCTG GCCACGCTGG ACAAGCCGAT GTTCGTCGAC
AATCAGTTGA TCAGCGTCAC CGGCTCGGTG GGCCTCGCCT GCGCGCCGCT GCACGGTCGT
GATCCGCAGA CCCTGATGAA AAACGCCGGT CTGGCCCTGC ACAAGGCCAA AGCCAATGGC
AAACATCAGG TTCAGGTGTT TACCGAAGCA TTGAATGCCG AGGCCAGCTA CAAGCTGTTC
GTGGAAAACA ACCTGCGCCG CGCCCTGACC CAGAACGAGC TGGAGGTGTT CTATCAGCCC
AAGCTGTGCC TGCTGACGGG CCGCCTGCTG GGCATGGAGG CGCTGCTGCG CTGGAATCAT
CCTGAAAAAG GCATGATCCG ACCGGACCAG TTCATCAGCG TGGCCGAAGA GACCGGCCTG
ATCATCCCCA TCGGTAAATG GGTCGCGCGT CAGTCCTGTC GCATGAGCAA GGACCTGACT
GCCGCAGGGT TCGGCAACCT GCAAGTGGCC ATCAATGTAT CGCCCAAGCA GTTTTCCGAC
CCGGAACTGG TGTCATCGAT TGCCGCCATC CTCAAAGAAG AAGAGCTTGA CCCTTCGCTG
CTGGAACTGG AGCTGACCGA AGGCCTGCTA CTGGAAGCGA CAGAAGATAC CCGCCAACAA
CTCGACTCGT TGAAAAAACT CGGCCTGTCG CTGGCCATGG ACGACTTCGG CACCGGTTAC
TCGTCATTCA GTTACCTGAA GAAATTCCCC ATCGATGTGA TCAAGATCGA TCGCAGCTTC
ATCCGCGATA TTCCGGATGA TGAAGACGAC ATGGAAATCA CCTCCGCGGT CATCGCCATG
GCTCACAACC TCAAGCTCAA AGTGGTCGCC GAAGGCATTG AAACTGCGGC TCAGCTGGCT
TTCCTGCGAC GCCACCGCTG CGATGTCGGC CAGGGCTATC TGTTCGACAG GCCTATCCCA
GGCCAAGAGC TGATCGAGAA ACTGAAGCGC TACCCTCGTC GCCCATCCGC CTGA
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| Protein sequence | MKSQTDAAGR SAAEVVTQLP VPSRLGMLRF ERLNEANWAL LFLDPNCERQ FGLAAVDLCA
LIGSPYASLM EPEARYQLHD DIQLQLASSP NYLIRYTLHS PKGPLGLLEI GEAYKQHNRH
LLRGYFLIVE GLVTTGEPVT DSDLETRNLR LQIALELNQR AQRDQFAHLE RVRAQQDLIL
RLTRHRYTTA NTLLEAAELI TKSACDIYDV DHVSIWNLND KRLEPITDYS RETGDYQSRT
PVDISPYPTY LQALNTSRAI DASNIQTDPR TCEMAKSLNP GETRAVLDAS IRIDGQVIGV
LCLEESGSTR EWQSDEIAFA GELADQFAQV INNHNRRAAT NALHLFQRAV EQSANAFLLV
NCNGVVEYVN PSFTAITQYS SEEVSGHKLS ELPALENLNQ LLLEANSSLT NSNSWQGEFK
SRRKNLEPYW GQLSISKVYG DNRELTHYIG IYEDITQSKL AQQRIERLAY TDNLTNLGNR
PAFIRNLDER FARDTDTPMS LLLVDIDNFK RINDSLGHQT GDKLLISLAR RLRNTLSPSD
ILARFASNEF AVLIDNTDQE AGHATATQVL ATLDKPMFVD NQLISVTGSV GLACAPLHGR
DPQTLMKNAG LALHKAKANG KHQVQVFTEA LNAEASYKLF VENNLRRALT QNELEVFYQP
KLCLLTGRLL GMEALLRWNH PEKGMIRPDQ FISVAEETGL IIPIGKWVAR QSCRMSKDLT
AAGFGNLQVA INVSPKQFSD PELVSSIAAI LKEEELDPSL LELELTEGLL LEATEDTRQQ
LDSLKKLGLS LAMDDFGTGY SSFSYLKKFP IDVIKIDRSF IRDIPDDEDD MEITSAVIAM
AHNLKLKVVA EGIETAAQLA FLRRHRCDVG QGYLFDRPIP GQELIEKLKR YPRRPSA
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