| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4732 |
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| Symbol | |
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| ID | 3370282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 5609519 |
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| End bp | 5611225 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637655099 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_237797 |
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| Protein GI | 66047956 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACTC AATCCGAATA CGACTACATC ATCATTGGTG CCGGCTCGGC CGGTAACACC
CTGGCAGCCC GTCTCACCGA AGACGCAGGC GTCACCGTTC TGCTGCTCGA AGCCGGTGGC
CCGGACTACC GTCTGGATTT CCGTACCCAG ATGCCTGCCG CCTTGGCATT CCCGCTGCAG
GGCCGTCGCT ACAACTGGGC CTACGAGACC GAGCCAGAGC CGCACATGAA CAACCGCCGG
ATGGAATGCG GTCGCGGCAA AGGCCTGGGC GGCTCATCGC TGATCAACGG CATGTGCTAT
ATCCGCGGCA ACGCGATGGA CTACGACGGC TGGGCCAAGG AGCCAGGTCT CGAAGACTGG
AGCTACCTCG ACTGCCTGCC GTACTTCCGC AAGGCCGAAA CCCGCGACAT CGGCCCGAAT
GATTACCACG GTGGTGAAGG TCCGGTCAGC GTGACCACGC CCAAGGCGGG CAACAATCCG
CTGTTCCACG CGATGGTCGA GGCGGGCGTG CAAGCCGGTT TCCCGCGCAC TGACGACCTC
AACGGTTATC AGCAGGAAGG TTTCGGTCCG ATGGACCGCA CCGTGACGCC TAACGGTCGT
CGCGCCAGTA CCGCCCGTGG TTATCTGGAC GAGGCCAAGA AGCGCTCGAC CCTGACCATA
GTCACTCACG CGCTGACCGA TCGCATTCTG TTCGAAGGCA AGCGTGCCGT CGGCGTGGCC
TACCTGGTGG GCGACAGCGA CACGCGCATC CAGGCCCGTG CCCGCAAGGA AGTGCTGCTG
TGTGGCGGCG CTATCGCTTC GCCACAGATT CTCCAGCGTT CCGGCGTCGG CCCGGCCGAA
GTGCTGAACA AGCTGGATAT CCCGGTGGTT CATGACCTGC CGGGCGTTGG CCAGAACCTT
CAGGATCACC TGGAGATGTA CCTGCAGTAC GCCTGCACCC AGCCGGTGTC GCTGTATCCT
TCGCTGAAGT GGTGGAACCA GCCGGCCATC GGTGCCGAGT GGATGTTCCT CGGTACAGGT
ATCGGCGCGA GCAACCAGTT TGAAGCCGGT GGTTTTATTC GCTCCAGCGA AGCGTTCGAA
TGGCCGAACA TTCAGTACCA CTTCCTGCCG GTGGCGATTA ACTACAACGG CACCAAGGGC
GTTCAGGAGC ACGGTTTCCA GGCTCACGTC GGCTCCATGC GTTCGCCGAG CCGTGGTCGT
GTGCAGGTCA AATCCAAAGA CCCGCGCGAG TACCCGAGCA TCCTGTTCAA CTACATGGCC
AGCGAGCAGG ACTGGCAGGA GTTCCGTGAC GGCATCCGCC TGACTCGCGA GATCATGCAG
CAACCGGCAC TGGACCCGTA CCGTGGCCGC GAAATCAGCC CCGGCATCGA CGTGCAGTCC
GACGAGGCGC TGGACCAGTT CGTGCGTGAG CATGCCGAAA CGGCTTATCA CCCGTCCTGC
TCGTGCAAGA TGGGCACCGA CGAGATGGCG GTTGTCGATG GTCAGGGTCG CGTGCATGGC
CTGCAAAGCC TGCGCGTGGT CGATGCCTCG ATCATGCCGA TCATCACCAC CGGTAACCTG
AATGCACCGA CGATCATGAT CGCCGAGAAA ATCGCCGACA AGATCCGTGG TCGTCAGCCT
CTGCCACGCA GCACGGCCGA CTACTTCGTC GCAGGCGACA AGCCGGCACG TGGCAAGCCG
CTGCGCGAGA TCAGCCACCA GGCCTGA
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| Protein sequence | MTTQSEYDYI IIGAGSAGNT LAARLTEDAG VTVLLLEAGG PDYRLDFRTQ MPAALAFPLQ
GRRYNWAYET EPEPHMNNRR MECGRGKGLG GSSLINGMCY IRGNAMDYDG WAKEPGLEDW
SYLDCLPYFR KAETRDIGPN DYHGGEGPVS VTTPKAGNNP LFHAMVEAGV QAGFPRTDDL
NGYQQEGFGP MDRTVTPNGR RASTARGYLD EAKKRSTLTI VTHALTDRIL FEGKRAVGVA
YLVGDSDTRI QARARKEVLL CGGAIASPQI LQRSGVGPAE VLNKLDIPVV HDLPGVGQNL
QDHLEMYLQY ACTQPVSLYP SLKWWNQPAI GAEWMFLGTG IGASNQFEAG GFIRSSEAFE
WPNIQYHFLP VAINYNGTKG VQEHGFQAHV GSMRSPSRGR VQVKSKDPRE YPSILFNYMA
SEQDWQEFRD GIRLTREIMQ QPALDPYRGR EISPGIDVQS DEALDQFVRE HAETAYHPSC
SCKMGTDEMA VVDGQGRVHG LQSLRVVDAS IMPIITTGNL NAPTIMIAEK IADKIRGRQP
LPRSTADYFV AGDKPARGKP LREISHQA
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