| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4731 |
|---|
| Symbol | |
|---|
| ID | 3370281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5608757 |
|---|
| End bp | 5609275 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637655098 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_237796 |
|---|
| Protein GI | 66047955 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.907591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGTCAG TCCCAAGCAC TCATAGCGAG ATCGTTGGTG CGCTGTATCG CGATCATCGC
GGCTGGCTGC TGGCCTGGCT CAGACGCAAT GTCGCCTGCC CGCAACGTGC TCAGGATTTG
AGTCAGGACA CGTTCGTGCG CTTGCTGGGG CGCCATGAAT TGCTTGCGCC CAGAGAACCG
CGTGCTTTCC TGGCAACCGT CGCCAAAGGG TTGATGTTCG ATCACTTCCG ACGCGCTGCG
CTGGAGCAGG CTTACCTCGG GGAATTGATG CAGGTGCCCG AGGCCGAGCA GCCCTCTCCG
GAAGAGCAGC TGCTGATTGT GGAAGACCTC AAGGCCATCG ACCGCATGCT CGGCACGCTG
TCCAGCAAAG CGCGTGCAGC TTTTCTATAC AGTCGCCTCG ACGGCATGAG TCACGCCGAG
ATTGCCGAGC AGCTGGGCGT TTCGGTCTCG CGCGTCAGGC AGTACCTGGC TCAGGCCATG
CGTCAGTGCT ACGTGGCGCT CTACGGTGAG CCGACGTGA
|
|---|
| Protein sequence | MSSVPSTHSE IVGALYRDHR GWLLAWLRRN VACPQRAQDL SQDTFVRLLG RHELLAPREP
RAFLATVAKG LMFDHFRRAA LEQAYLGELM QVPEAEQPSP EEQLLIVEDL KAIDRMLGTL
SSKARAAFLY SRLDGMSHAE IAEQLGVSVS RVRQYLAQAM RQCYVALYGE PT
|
|---|
| |