Gene Psyr_4642 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4642 
Symbol 
ID3370191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp5504338 
End bp5506824 
Gene Length2487 bp 
Protein Length828 aa 
Translation table11 
GC content59% 
IMG OID637655011 
ProductPAS:GGDEF 
Protein accessionYP_237710 
Protein GI66047869 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGGAG TAATCAACAC CAGTGACCGG GAAGCGTCAT GCCTGTCCGA GGGAAAATTC 
GCCTCGATCT TCGCTCAATG CCCGGATGCC ATGCTTATCG TCAGCCTTGC TGACGGGCAC
ATCATGGATG CCAACGAATC GTTCGTAGAG CGAACCGGTA TCCCCCTTGA TGAAGTGATT
GGCAAGACCC CCACAGAACT GAATCTGTGG GCAGTGCCAG GCATCGGCCC AAAAGTCTTG
CTGCAATTGC AGACCGGCGA TATCCATAAT CTGGAGATAC CCTTTCGGCG CAAAAACGGC
GAAACCTTTT CAGGGCTCAT GTCCGCCCAA CCGTTCGAGC ATAGCCCGAT ACCTGCCGTG
CTGGTGATAG TGCGTGACAT CACCCAGCTC AAACTGGCCC GACAACAATT ACAGCTTTCC
GAAGAGAAGT TCGCCAAAGC CTTCCATGCC TCGCCTGACG GGATGGCGAT TACCCGGCAG
CAGGACGGCA TGCTTCTGGA GGTCAACGAA GGGTTCTGCC GTCAGACCGG GTACAGCGAA
AAGTACTGCC TTGACCACTC GACATTCGAC CTGGGCATCT GGGTCGACCT GAGCGAGCGT
TCAAAGCTCA TCGAACGCAT GAAAAAGCAT GGCTTCGTCA AGGATATGCG GGTACGGATT
CGTAACAACA ATGGCGATAT TCGACTGTGC GAACTGTCCT CTCAACCCCT CATCATTGCG
GGTGAAGACT GTCTGCTGAC GATTACTCGG GATATCACCG AAAGCAGGCA AATGCAGGAG
AAACTCCATC TGGCGGCGAC TGTTTTCGAG AGCACTGCCG AAGGTGTGCT CATCACCAAT
ACCGACCAGA GCATCAGCGC CGTCAACCGC GCGTTCACGG AAATCACTGG CTACAGCGAA
AGTGAAGCCA TCGGGAAGAC CCCTCGCCTG CTTGCCTCTG GCCAACACGA CAGCGCGTTC
TACGCCGCGA TGTGGCACCA ACTGGCAGCC GAGGGCCACT GGCAGGGCGA AATCAGCAAC
CGTCGAAAGA ACGGCGAGCT TTACCCGAGT TGGCTGACCA TCAGCGCCGT GCGCAACAAA
GACAACCTCC TGACCCACTT CGTCGCCGTG TTCGCCGACA TCTCCAGCCT CAAACAAGCA
CAGGCGCGGC TCGACTATCA GGCCCACCAT GATCCGCTCA CCGGCCTGCC CAACCGAATA
CTGTTCGAGA GCAGGCTTCA AGCCGCCCTG CTGCACAGCG AAGAATCCGG CAGCCTCGGC
GCAGTCCTGT TTCTCGACCT GGACCGCTTC AAGCACATCA ATGACAGCCT GGGCCACCCG
GTCGGCGATC TGCTGCTCAA AGGCATCGCA CACCGGCTCA AGGAAACCCT GCGCGACATC
GACACCGTTG CACGCCTGGG TGGCGACGAG TTCATCGTCC TGCTGCCCGG CCTGCTGCAA
ACCAGCGACG CACAGGCCAT CGCCAATAAA TTACTGGCCT GCTTCAGCAC GCCTTTTGAA
GCTGGCGAAC ATGAGCTCTA CATCAGCCCC AGCATCGGCA GTTGCGTGTT CCCTACCGAC
GGCACCGACG TGGCCACGCT GGTCAAAAAT GCCGACGCGG CGATGTACCG CTCCAAGGCA
AAAGGCCGCA ACCGGGTCGA AAGCTATACC TGCGACCTCA GTGACCAGGC CAGCGAGCGC
ATCGCCCTCG AGCAGGAACT GAGAAGAGCT CTGGAGCGCA ATCAACTGAC ACTGGCCTAC
CAGCCCAAAA TCGACCTGCT GACCCACACA ATGGCAGGCG CAGAAGCCCT GATCCGCTGG
AACCACCCAA CCTTTGGCGA AGTGCCGCCC GAGCACTTCA TTCCCCTGGC TGAAGAAAAC
GGCATGATCC TGCAGATCGG CGACTGGGTG CTGGAGCAGG CCTGCCGCCA GATGGGTATA
TGGCGCAAGA CCTGTCAGCC GTTCGGCCCG CTGTCGGTGA ACCTGGCAGG CGCTCAACTG
CGCCAGACCA ACCTGCTGGA ACGCATCGAA CAGCTTCTCA CGGACAACGG CCTGGAACCC
GGTTGCCTGC AACTGGAGAT CACCGAAAAC TTCATCATGA GCCAGACCCA AGAAGCACTG
GCCGTGCTGC ACCAATTGAA GACACTCGGC GTGCAACTGG CGATCGACGA CTTCGGCACC
GGCTACTCCT CACTGAGCTA CCTCAAACGC CTGCCACTGG ACATCCTCAA GATCGACCAG
TCCTTCGTCC GCGGCCTGCC GGAAGACACC CACGACGCCG CCATCGTCCG CGCCATCATC
GCCCTTGGGC GCAGCCTGCA ACTGACCGTG ATCGCCGAGG GCGTGGAGAA CAGCGAACAG
CAGCAATTCC TGACCAGCGA AGGCTGCGAA CAGATCCAGG GCTACATCAT CAGCCTGCCC
CTCGACGCCG AAGAATTCCG CGCAAGATTT CTTCTGATGA ATCTTTCGGA CTTTTCGGAT
AGCACAGCCG CGAAACCGCC GTTATAA
 
Protein sequence
MRGVINTSDR EASCLSEGKF ASIFAQCPDA MLIVSLADGH IMDANESFVE RTGIPLDEVI 
GKTPTELNLW AVPGIGPKVL LQLQTGDIHN LEIPFRRKNG ETFSGLMSAQ PFEHSPIPAV
LVIVRDITQL KLARQQLQLS EEKFAKAFHA SPDGMAITRQ QDGMLLEVNE GFCRQTGYSE
KYCLDHSTFD LGIWVDLSER SKLIERMKKH GFVKDMRVRI RNNNGDIRLC ELSSQPLIIA
GEDCLLTITR DITESRQMQE KLHLAATVFE STAEGVLITN TDQSISAVNR AFTEITGYSE
SEAIGKTPRL LASGQHDSAF YAAMWHQLAA EGHWQGEISN RRKNGELYPS WLTISAVRNK
DNLLTHFVAV FADISSLKQA QARLDYQAHH DPLTGLPNRI LFESRLQAAL LHSEESGSLG
AVLFLDLDRF KHINDSLGHP VGDLLLKGIA HRLKETLRDI DTVARLGGDE FIVLLPGLLQ
TSDAQAIANK LLACFSTPFE AGEHELYISP SIGSCVFPTD GTDVATLVKN ADAAMYRSKA
KGRNRVESYT CDLSDQASER IALEQELRRA LERNQLTLAY QPKIDLLTHT MAGAEALIRW
NHPTFGEVPP EHFIPLAEEN GMILQIGDWV LEQACRQMGI WRKTCQPFGP LSVNLAGAQL
RQTNLLERIE QLLTDNGLEP GCLQLEITEN FIMSQTQEAL AVLHQLKTLG VQLAIDDFGT
GYSSLSYLKR LPLDILKIDQ SFVRGLPEDT HDAAIVRAII ALGRSLQLTV IAEGVENSEQ
QQFLTSEGCE QIQGYIISLP LDAEEFRARF LLMNLSDFSD STAAKPPL