| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4642 |
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| Symbol | |
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| ID | 3370191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5504338 |
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| End bp | 5506824 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637655011 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_237710 |
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| Protein GI | 66047869 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGGAG TAATCAACAC CAGTGACCGG GAAGCGTCAT GCCTGTCCGA GGGAAAATTC
GCCTCGATCT TCGCTCAATG CCCGGATGCC ATGCTTATCG TCAGCCTTGC TGACGGGCAC
ATCATGGATG CCAACGAATC GTTCGTAGAG CGAACCGGTA TCCCCCTTGA TGAAGTGATT
GGCAAGACCC CCACAGAACT GAATCTGTGG GCAGTGCCAG GCATCGGCCC AAAAGTCTTG
CTGCAATTGC AGACCGGCGA TATCCATAAT CTGGAGATAC CCTTTCGGCG CAAAAACGGC
GAAACCTTTT CAGGGCTCAT GTCCGCCCAA CCGTTCGAGC ATAGCCCGAT ACCTGCCGTG
CTGGTGATAG TGCGTGACAT CACCCAGCTC AAACTGGCCC GACAACAATT ACAGCTTTCC
GAAGAGAAGT TCGCCAAAGC CTTCCATGCC TCGCCTGACG GGATGGCGAT TACCCGGCAG
CAGGACGGCA TGCTTCTGGA GGTCAACGAA GGGTTCTGCC GTCAGACCGG GTACAGCGAA
AAGTACTGCC TTGACCACTC GACATTCGAC CTGGGCATCT GGGTCGACCT GAGCGAGCGT
TCAAAGCTCA TCGAACGCAT GAAAAAGCAT GGCTTCGTCA AGGATATGCG GGTACGGATT
CGTAACAACA ATGGCGATAT TCGACTGTGC GAACTGTCCT CTCAACCCCT CATCATTGCG
GGTGAAGACT GTCTGCTGAC GATTACTCGG GATATCACCG AAAGCAGGCA AATGCAGGAG
AAACTCCATC TGGCGGCGAC TGTTTTCGAG AGCACTGCCG AAGGTGTGCT CATCACCAAT
ACCGACCAGA GCATCAGCGC CGTCAACCGC GCGTTCACGG AAATCACTGG CTACAGCGAA
AGTGAAGCCA TCGGGAAGAC CCCTCGCCTG CTTGCCTCTG GCCAACACGA CAGCGCGTTC
TACGCCGCGA TGTGGCACCA ACTGGCAGCC GAGGGCCACT GGCAGGGCGA AATCAGCAAC
CGTCGAAAGA ACGGCGAGCT TTACCCGAGT TGGCTGACCA TCAGCGCCGT GCGCAACAAA
GACAACCTCC TGACCCACTT CGTCGCCGTG TTCGCCGACA TCTCCAGCCT CAAACAAGCA
CAGGCGCGGC TCGACTATCA GGCCCACCAT GATCCGCTCA CCGGCCTGCC CAACCGAATA
CTGTTCGAGA GCAGGCTTCA AGCCGCCCTG CTGCACAGCG AAGAATCCGG CAGCCTCGGC
GCAGTCCTGT TTCTCGACCT GGACCGCTTC AAGCACATCA ATGACAGCCT GGGCCACCCG
GTCGGCGATC TGCTGCTCAA AGGCATCGCA CACCGGCTCA AGGAAACCCT GCGCGACATC
GACACCGTTG CACGCCTGGG TGGCGACGAG TTCATCGTCC TGCTGCCCGG CCTGCTGCAA
ACCAGCGACG CACAGGCCAT CGCCAATAAA TTACTGGCCT GCTTCAGCAC GCCTTTTGAA
GCTGGCGAAC ATGAGCTCTA CATCAGCCCC AGCATCGGCA GTTGCGTGTT CCCTACCGAC
GGCACCGACG TGGCCACGCT GGTCAAAAAT GCCGACGCGG CGATGTACCG CTCCAAGGCA
AAAGGCCGCA ACCGGGTCGA AAGCTATACC TGCGACCTCA GTGACCAGGC CAGCGAGCGC
ATCGCCCTCG AGCAGGAACT GAGAAGAGCT CTGGAGCGCA ATCAACTGAC ACTGGCCTAC
CAGCCCAAAA TCGACCTGCT GACCCACACA ATGGCAGGCG CAGAAGCCCT GATCCGCTGG
AACCACCCAA CCTTTGGCGA AGTGCCGCCC GAGCACTTCA TTCCCCTGGC TGAAGAAAAC
GGCATGATCC TGCAGATCGG CGACTGGGTG CTGGAGCAGG CCTGCCGCCA GATGGGTATA
TGGCGCAAGA CCTGTCAGCC GTTCGGCCCG CTGTCGGTGA ACCTGGCAGG CGCTCAACTG
CGCCAGACCA ACCTGCTGGA ACGCATCGAA CAGCTTCTCA CGGACAACGG CCTGGAACCC
GGTTGCCTGC AACTGGAGAT CACCGAAAAC TTCATCATGA GCCAGACCCA AGAAGCACTG
GCCGTGCTGC ACCAATTGAA GACACTCGGC GTGCAACTGG CGATCGACGA CTTCGGCACC
GGCTACTCCT CACTGAGCTA CCTCAAACGC CTGCCACTGG ACATCCTCAA GATCGACCAG
TCCTTCGTCC GCGGCCTGCC GGAAGACACC CACGACGCCG CCATCGTCCG CGCCATCATC
GCCCTTGGGC GCAGCCTGCA ACTGACCGTG ATCGCCGAGG GCGTGGAGAA CAGCGAACAG
CAGCAATTCC TGACCAGCGA AGGCTGCGAA CAGATCCAGG GCTACATCAT CAGCCTGCCC
CTCGACGCCG AAGAATTCCG CGCAAGATTT CTTCTGATGA ATCTTTCGGA CTTTTCGGAT
AGCACAGCCG CGAAACCGCC GTTATAA
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| Protein sequence | MRGVINTSDR EASCLSEGKF ASIFAQCPDA MLIVSLADGH IMDANESFVE RTGIPLDEVI
GKTPTELNLW AVPGIGPKVL LQLQTGDIHN LEIPFRRKNG ETFSGLMSAQ PFEHSPIPAV
LVIVRDITQL KLARQQLQLS EEKFAKAFHA SPDGMAITRQ QDGMLLEVNE GFCRQTGYSE
KYCLDHSTFD LGIWVDLSER SKLIERMKKH GFVKDMRVRI RNNNGDIRLC ELSSQPLIIA
GEDCLLTITR DITESRQMQE KLHLAATVFE STAEGVLITN TDQSISAVNR AFTEITGYSE
SEAIGKTPRL LASGQHDSAF YAAMWHQLAA EGHWQGEISN RRKNGELYPS WLTISAVRNK
DNLLTHFVAV FADISSLKQA QARLDYQAHH DPLTGLPNRI LFESRLQAAL LHSEESGSLG
AVLFLDLDRF KHINDSLGHP VGDLLLKGIA HRLKETLRDI DTVARLGGDE FIVLLPGLLQ
TSDAQAIANK LLACFSTPFE AGEHELYISP SIGSCVFPTD GTDVATLVKN ADAAMYRSKA
KGRNRVESYT CDLSDQASER IALEQELRRA LERNQLTLAY QPKIDLLTHT MAGAEALIRW
NHPTFGEVPP EHFIPLAEEN GMILQIGDWV LEQACRQMGI WRKTCQPFGP LSVNLAGAQL
RQTNLLERIE QLLTDNGLEP GCLQLEITEN FIMSQTQEAL AVLHQLKTLG VQLAIDDFGT
GYSSLSYLKR LPLDILKIDQ SFVRGLPEDT HDAAIVRAII ALGRSLQLTV IAEGVENSEQ
QQFLTSEGCE QIQGYIISLP LDAEEFRARF LLMNLSDFSD STAAKPPL
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