| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4641 |
|---|
| Symbol | |
|---|
| ID | 3370190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5502219 |
|---|
| End bp | 5504069 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637655010 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_237709 |
|---|
| Protein GI | 66047868 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.594079 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGAA AAGCGCAACA GCAATCTCGT ATCAAAGAGT TGATCACCCT GGGTCGTGAG
CAGAAGTATC TGACTTACGC AGAGGTCAAC GACCACTTGC CCGAGGATAT TTCAGATCCC
GAGCAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCCCGGT ACACGAGAGT
GCTCCGGATG CGGACGCCTT GATGCTGGCC GACGCCGATA CCGACGAGGC AGCCGCAGAA
GAAGCGGCTG CAGCGTTGGC AGCGGTCGAG ACCGACATCG GTCGTACCAC CGATCCTGTT
CGTATGTACA TGCGGGAAAT GGGCACCGTT GAACTTCTGA CCCGTGAAGG CGAAATCGAA
ATCGCCAAAC GTATCGAAGA AGGCATCCGT GAAGTGATGG GCGCAATTGC GCACTTCCCA
GGCACGGTTG ACCACATTCT CTCCGAATAC ACACGCGTCA CCAGTGAAGG CGGTCGCCTT
TCCGATGTCC TGAGCGGCTA TATCGACCCG GACGACGGCA TTGCGCCGCC TGCCGAAGTC
CCGCCGCCTG TCGACCCCAA AGCCGTCAAG GCCGAAGGTG CCGATGACGA CGAGGAAGAG
TCGGCAGACG CCAGCGACGA AGAAGACGAA GTCGAGAGCG GTCCTGATCC GGTCATCGCC
CAGCAGCGCT TCGGTGCGGT TTCCGATCAA ATGGAAATCA CCCGCAAGGC CCTGAAGAAA
TTTGGTCGCG ACGACAAGCA CGCCATTGCC GAAATGGTTG CACTGGCCGA ACTGTTCATG
CCGATCAAAC TGGTTCCAAA ACAGTTTGAA GGTCTGGTAG AGCGTGTACG CGGTGCCCTC
GAGCGTCTTC GCGCCCAGGA ACGCGCCATC ATGCAGCTGT GTGTACGTGA TGCACGTATG
CCGCGCGCCG ATTTCCTGCG CCAGTTCCCG GGCAACGAAG TCGACGAAAG CTGGACTGAC
GCACTGGCCA AGGGCAAGAG CAAATACGCC GAAGCCATCG GTCGCCTGCA GCCTGACATC
CAGCGTTGCC AGCAGAAGCT GTCTGCACTG GAAGAAGAGA CTGGCCTGAA AATCGCCGAG
ATCAAGGACA TCAACCGTCG CATGTCGATC GGTGAGGCCA AGGCCCGCCG CGCGAAGAAA
GAGATGGTTG AAGCGAACTT GCGTCTGGTG ATCTCCATCG CCAAGAAGTA CACCAACCGT
GGTCTGCAAT TCCTCGATCT GATCCAGGAA GGCAACATCG GCTTGATGAA GGCTGTGGAC
AAGTTCGAAT ACCGTCGTGG CTACAAGTTC TCGACTTATG CCACCTGGTG GATCCGTCAG
GCGATCACTC GCTCGATTGC CGACCAGGCA CGCACCATTC GTATTCCGGT GCACATGATC
GAGACGATCA ACAAGCTCAA CCGTATTTCC CGGCAGATGT TGCAGGAAAT GGGTCGCGAA
CCGACCCCGG AAGAGCTGGG CGAACGCATG GAAATGCCTG AGGATAAAAT CCGCAAGGTA
TTGAAGATCG CAAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA CGAAGATTCG
CACTTGGGTG ACTTCATCGA AGACTCGACC ATGCAGTCGC CAATCGATGT CGCCACTGTT
GAAAGCCTCA AAGAAGCAAC ACGCGAAGTG CTGTCGGGCC TTACCGCCCG TGAAGCCAAG
GTTCTGCGCA TGCGCTTCGG CATCGACATG AATACCGACC ACACGCTTGA AGAGGTTGGT
AAGCAGTTTG ACGTGACCCG CGAGCGGATT CGTCAGATCG AAGCCAAGGC ACTGCGCAAG
CTGCGTCACC CGACAAGAAG CGAGCACCTG CGCTCGTTCC TCGACGAGTA A
|
|---|
| Protein sequence | MSGKAQQQSR IKELITLGRE QKYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGIPVHES
APDADALMLA DADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMGAIAHFP GTVDHILSEY TRVTSEGGRL SDVLSGYIDP DDGIAPPAEV
PPPVDPKAVK AEGADDDEEE SADASDEEDE VESGPDPVIA QQRFGAVSDQ MEITRKALKK
FGRDDKHAIA EMVALAELFM PIKLVPKQFE GLVERVRGAL ERLRAQERAI MQLCVRDARM
PRADFLRQFP GNEVDESWTD ALAKGKSKYA EAIGRLQPDI QRCQQKLSAL EEETGLKIAE
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV
ESLKEATREV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPTRSEHL RSFLDE
|
|---|
| |