| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4614 |
|---|
| Symbol | |
|---|
| ID | 3370163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5471880 |
|---|
| End bp | 5472914 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637654983 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_237682 |
|---|
| Protein GI | 66047841 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.874692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.965424 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAT CTTTGAAGTT CACCGCCATC ACGTTGGGCA TGATGTGCGC GGCGCAAGCC
ATGGCAGCCA CCGACCTGAC CGTCATCTCC TTTGGCGGTG CCAACAAGGC CGCTCAGGAA
AAGGCCTTCT ACGCGCCTTG GGAAAAGGCT GGCAACGGCA AGATCATCGC CGGTGAGTAC
AACGGGGAAA TGGCCAAGGT CAAAACCATG GTCGACACCA AGAGCGTTTC CTGGGACCTG
GTAGAAGTCG AATCGCCGGA ACTGGCGCGT GGTTGCGACG AAGACATGTT CGAAGAGCTG
GACCCGAAAC AGCTGGGCAA TGCCGCTGAC TTCGTGCCTG GCGCCATCAC CACCTGCGGT
GCCGGCTTCT TCGTCTGGTC CACCGTGCTG GCCTACAACG CTGACAAAGT CAGCACTGCA
CCCAGCGGCT GGGCCGATTT CTGGGACACC AAGAAATTCC CGGGCAAGCG CGGCCTGCGC
AAAGGCGCCA AGTACACCCT GGAATTCGCC CTGATGGCCG ACGGCGTTGC GCCGAAAGAC
GTCTACAAGG TATTGGCTAG CAAAGACGGC CAGGACCGCG CGTTCAAAAA GCTGGATGAG
CTCAAGCCAA ACATTCAGTG GTGGGAAGCT GGCGCGCAGC CGCCGCAGTA CCTCGCTTCC
GGTGACGTGG TGATGAGCTC GGCCTACAAC GGCCGGATCG CCGCCGTGCA GAAGGAAAGC
AATCTCAAAG TCGTGTGGAC CGGTGGCGTG TATGACTTCG ACGCCTGGGC CATCCCGAAG
GGTTCGAAAA ACGCCGATGC CGCGAAGAAG TTCATCGCCT ACATGCTGAG CCCCGAGCAG
CAGAAGACCT ACTCGCAGAA CATCGCCTAC GGCCCGGCCA ACACCCAGGC GGTCAAGCTG
CTGGACAAGG AAACCCTGCA GAACATGCCG ACCACGCCTG AGAACATCAA GGATCAGGTG
CAGATGGACG TGGCGTTCTG GACCGACAAC GGCGAATCCC TCGAGCAGCG TTTCACTGCC
TGGGCTGCCA AGTAA
|
|---|
| Protein sequence | MLKSLKFTAI TLGMMCAAQA MAATDLTVIS FGGANKAAQE KAFYAPWEKA GNGKIIAGEY
NGEMAKVKTM VDTKSVSWDL VEVESPELAR GCDEDMFEEL DPKQLGNAAD FVPGAITTCG
AGFFVWSTVL AYNADKVSTA PSGWADFWDT KKFPGKRGLR KGAKYTLEFA LMADGVAPKD
VYKVLASKDG QDRAFKKLDE LKPNIQWWEA GAQPPQYLAS GDVVMSSAYN GRIAAVQKES
NLKVVWTGGV YDFDAWAIPK GSKNADAAKK FIAYMLSPEQ QKTYSQNIAY GPANTQAVKL
LDKETLQNMP TTPENIKDQV QMDVAFWTDN GESLEQRFTA WAAK
|
|---|
| |