| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4558 |
|---|
| Symbol | rplA |
|---|
| ID | 3370098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5417872 |
|---|
| End bp | 5418567 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637654918 |
|---|
| Product | 50S ribosomal protein L1 |
|---|
| Protein accession | YP_237626 |
|---|
| Protein GI | 66047785 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0081] Ribosomal protein L1 |
|---|
| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.759483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0544864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC TGACCAAGCG TCAAAAGGCA ATCGCCGAAA AAATCGAAGC TGGCAAGTCT
TACAATTTTG TAGACGCCGC TGCGTTGCTC ACCGAGCTGT CGACTGTCAA GTTCAGCGAG
TCCATCGACG TCGCTGTCAA CCTGGGTGTT GATCCTCGTA AATCCGACCA GGTCGTACGT
AGCGCTACTG TACTGCCGCA CGGTACTGGC AAGACTGTAC GCGTTGCAGT ATTCACCCAG
GGTCCTGCTG CTGAAGCTGC TCTGGCTGCC GGTGCTGACC GCGTGGGTAT GGACGATCTG
GCCGCTGAAA TGAAAGCTGG CGATCTGAAC TACGACGTCG TTATCGCTTC CCCTGATGCA
ATGCGCGTTG TGGGTCAGCT GGGTCAGGTT CTCGGTCCTC GCGGTCTGAT GCCTAACCCG
AAAGTCGGCA CCGTTACTCC TGACGTCGCT AACGCCGTCA AGAACGCCAA GGCTGGTCAG
GTTCGTTATC GCACCGACAA AAACGGCATC ATCCACACTT CCGTTGGCAA GGTCGGTTTC
GACGCTGTCA AGCTGAAGGA AAACGTTGAA GCCCTGATCG CTGATCTGAA GCGTATCAAG
CCTGCTTCTT CGAAAGGTAT TTACGTCAAG CGCATCACCC TGAGCACCAC TATGGGCCCA
GGCCTGGTTA TCGACCAGGG TTCGTTGGAA GCGTAA
|
|---|
| Protein sequence | MAKLTKRQKA IAEKIEAGKS YNFVDAAALL TELSTVKFSE SIDVAVNLGV DPRKSDQVVR
SATVLPHGTG KTVRVAVFTQ GPAAEAALAA GADRVGMDDL AAEMKAGDLN YDVVIASPDA
MRVVGQLGQV LGPRGLMPNP KVGTVTPDVA NAVKNAKAGQ VRYRTDKNGI IHTSVGKVGF
DAVKLKENVE ALIADLKRIK PASSKGIYVK RITLSTTMGP GLVIDQGSLE A
|
|---|
| |