| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4557 |
|---|
| Symbol | rplJ |
|---|
| ID | 3370097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5417169 |
|---|
| End bp | 5417669 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637654917 |
|---|
| Product | 50S ribosomal protein L10 |
|---|
| Protein accession | YP_237625 |
|---|
| Protein GI | 66047784 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0244] Ribosomal protein L10 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.669843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0090203 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGGCAATTA AACTCGAAGA CAAGAAGGCC ATCGTCGCTG AAGTCAACGA GGCTGCCAAA
GCTGGTCTGT CCGCTGTCGT GGCTGATGCC CGTGGTGTGA CGGTTGGCGC AATGACCGGA
CTCCGTAAAG AGGCTCGTGA AGCTGGCGTT TACGTACGTG TTGTACGTAA CACCCTGCTC
AAGCGCGCTG TTGCTGACAC TGAATTCAGT GTTCTCAACG ACGTGTTCAC CGGCCCGACC
TTGATCGCGT TCTCCAACGA ACATCCTGGC GCTGCTGCCC GTCTGTTCAA GGAATTCGCT
AAAGGTCAGG ACAAGTTCGA GATCAAGGCA GCTGCGTTCG AGGGCAAGTT CCTCGCAGCT
AATCAGATCG ATGTACTGGC AAGCCTGCCG ACCCGTAACG AAGCAATTTC TCAGCTGATG
AGCGTGATTC AAGGCGCTAC CAGCAAATTG GCTCGTACTC TGGCGGCTGT TCGCGACCAA
AAAGAAGCAG CTGCAGCCTA A
|
|---|
| Protein sequence | MAIKLEDKKA IVAEVNEAAK AGLSAVVADA RGVTVGAMTG LRKEAREAGV YVRVVRNTLL
KRAVADTEFS VLNDVFTGPT LIAFSNEHPG AAARLFKEFA KGQDKFEIKA AAFEGKFLAA
NQIDVLASLP TRNEAISQLM SVIQGATSKL ARTLAAVRDQ KEAAAA
|
|---|
| |