| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4555 |
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| Symbol | rpoB |
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| ID | 3370095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 5412429 |
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| End bp | 5416502 |
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| Gene Length | 4074 bp |
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| Protein Length | 1357 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637654915 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_237623 |
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| Protein GI | 66047782 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00695009 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCTTACT CATATACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC
GTAATGGATG TGCCGTATCT CTTGGCCATC CAGCTGGATT CGTATCGCGA ATTCCTGCAG
GCGGGAGCGA CCAAAGATCA GTTCCGCGAC GTCGGTCTGC ATGCAGCCTT CAAATCCGTT
TTCCCGATCA TCAGCTACTC CGGCAATGCT GCGCTGGAGT ATGTAGGTTA TCGCTTGGGC
GAACCGGCAT TTGATGTCAA GGAATGCGTG CTGCGCGGTG TGACTTACGC AGTACCTCTG
CGAGTCAAGG TCCGTCTGAT CATTTTCGAC AAAGAATCGT CGAACAAAGC GATCAAGGAC
ATCAAAGAGC AAGAAGTCTA CATGGGTGAA ATACCCCTGA TGACTGAGAA CGGTACCTTT
GTAATCAACG GCACCGAGCG CGTTATCGTG TCTCAGCTGC ACCGTTCGCC TGGCGTATTC
TTCGACCACG ACCGTGGCAA GACGCACAGC TCCGGTAAGC TGCTGTACTC CGCTCGTATC
ATTCCTTACC GCGGTTCGTG GCTGGACTTC GAGTTCGATC CGAAAGACTG CGTATTCGTC
CGTATCGACC GTCGTCGCAA GCTGCCTGCG TCCGTACTTC TGCGCGCTCT GGGTTACACC
ACCGAGCAAG TGCTCGATGC GTTCTACACC ACCAACGTAT TCCATGTGCG CGGTGAAAAC
CTGAGCCTGG AACTGGTGCC TCAGCGCCTG CGTGGTGAAA TTGCCGTTCT GGACATCCTG
GACGACAAGG GCAAGGTCAT TGTCGAGCAG GGTCGTCGTA TCACTGCCCG TCACATCAAC
CAGCTGGAAA AGGCCGGGAT CAAAGAGCTG GAAGTGCCTC TGGACTACGT CCTGGGTCGC
ACTACAGCCA AGGTCATCGT GCATCCGGCA ACCGGTGAGA TCATTGCCGA GTGCAACACC
GAGCTGAACA CTGAAATCCT GGCCAAGATC GCCAAGGCTC AGGTTGTTCG TATCGAAACC
TTGTACACCA ACGACATCGA TTGCGGTCCG TTCGTCTCCG ACACACTGAA GATCGACTCC
ACCAGCAACC AACTGGAAGC GCTGGTCGAG ATCTATCGCA TGATGCGTCC TGGCGAGCCG
CCAACCAAGG ATGCCGCTGA AACACTGTTC AACAACCTGT TCTTCAGCCC TGAGCGTTAT
GACCTGTCCG CTGTAGGTCG TATGAAGTTC AACCGTCGTA TCGGTCGTAC CGAAATCGAA
GGTTCGGGCG TGCTGTGCAA GGAAGACATC GTAGCGGTCC TCAAGACCCT CGTTGATATC
CGTAACGGCA AAGGCATCGT CGATGACATC GACCACCTCG GTAACCGTCG CGTTCGTTGC
GTAGGCGAGA TGGCCGAGAA CCAGTTCCGT GTTGGTCTGG TCCGTGTCGA GCGCGCTGTC
AAAGAGCGTC TGTCCATGGC AGAAAGCGAA GGCCTGATGC CTCAGGACCT GATCAACGCC
AAACCTGTTG CGGCGGCGGT CAAGGAGTTC TTCGGTTCCA GCCAGCTTTC CCAGTTCATG
GGCCAGAACA ACCCGCTGTC CGAGATCACG CACAAGCGTC GTGTTTCCGC ACTCGGCCCT
GGCGGTCTGA CGCGTGAGCG CGCCGGCTTT GAAGTTCGAG ACGTTCACCC GACTCACTAC
GGCCGTGTGT GCCCGATCGA GACGCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCCTG
GCGGCCTATG CCCGCACCAA CCAGTACGGC TTCCTCGAGA GCCCGTACCG TGTGGTCAAG
GAAGGTCTGG TCACCGAAGA GATCGTGTTC CTTTCAGCGA TCGAAGAAGC GGATCACGTC
ATTGCCCAGG CTTCGGCCGC AATGAACGAC AAGCAAGAGC TGATCGACGA ACTGGTTGCT
GTGCGTCACT TGAACGAATT CACCGTCAAG GCGCCAGCCG ATGTCACCCT GATGGACGTT
TCGCCCAAGC AGGTTGTCTC GGTAGCTGCA TCGCTGATTC CGTTCCTCGA GCACGATGAC
GCCAACCGTG CGTTGATGGG TTCGAACATG CAGCGTCAGG CTGTTCCTAC TCTGCGCGCC
GACAAGCCGC TGGTAGGTAC TGGCATGGAG CGCAACGTTG CTCGCGACTC CGGCGTTTGC
GTCGTGGCTC GTCGCGGTGG TGTGATCGAC TCGGTTGACG CCAGCCGTAT CGTTGTTCGC
GTTGCCGATG ATGAAGTTGA AACAGGTGAG GCGGGTGTAG ACATCTACAA CCTGACCAAA
TACACCCGTT CGAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTCAG CAAGGGTGAC
CGTGTTCAGC GTAGCGACAT CATGGCCGAC GGCCCGTCCA CCGATATGGG TGAACTGGCG
CTGGGTCAGA ACATGCGCAT CGCGTTCATG GCCTGGAACG GTTTCAACTT CGAAGACTCC
ATCTGTCTTT CTGAGCGTGT TGTTCAGGAG GACCGTTTCA CCACGATCCA CATTCAGGAA
CTGACCTGTG TGGCGCGTGA TACCAAGCTT GGGCCAGAGG AAATCACAGC TGACATCCCT
AACGTGGGTG AAGCGGCTCT GAACAAGCTG GACGAAGCGG GTATCGTTTA TGTAGGTGCC
GAAGTCGGCG CCGGCGACAT CCTGGTCGGT AAGGTCACTC CGAAAGGCGA GACCCAGCTG
ACTCCGGAAG AAAAACTGTT GCGCGCGATC TTCGGTGAGA AGGCCAGCGA CGTTAAAGAC
ACCTCCCTGC GCGTACCAAC CGGTACCAAA GGTACTGTCA TTGACGTTCA GGTCTTCACC
CGTGATGGTG TCGAGCGTGA TGCGCGTGCC CTGTCCATCG AGAAGTCGCA ACTCGACGAG
ATCCGCAAGG ATCTGAACGA AGAGTTCCGT ATTGTCGAAG GCGCTACTTT CGAACGTCTG
CGCTCTGCGC TGGTGGGTCG TGTAGCTGAA GGCGGCGCTG GCCTCAAGAA GGGCCAGGAA
ATCACCAACG AAGTGCTCGA TGGTCTTGAG CATGGTCAGT GGTTCAAGCT GCGCATGGCT
GAAGATGCTC TCAACGAGCA GCTCGAAAAA GCTCAGGCTT ACATCGTTGA TCGTCGCCGT
CTTCTGGATG ACAAGTTCGA AGACAAGAAA CGCAAACTGC AGCAGGGCGA TGACCTGGCT
CCAGGCGTTC TGAAAATCGT CAAGGTCTAC CTGGCAATCC GTCGCCGCAT CCAGCCGGGC
GACAAGATGG CCGGTCGTCA CGGTAACAAG GGTGTGGTCT CTGTGATCAT GCCGGTTGAA
GACATGCCGC ACGATGCCAA TGGCACGCCG GTTGATATCG TCCTCAACCC GCTGGGCGTA
CCTTCGCGTA TGAACGTTGG TCAGATTCTC GAAACCCACC TGGGCCTCGC GGCCAAAGGT
CTGGGCGAGA AGATCAACCG CATGCTCGAA GAGCAGCGTA AAGTTGCTGA GCTGCGCAAG
TTCCTCAACG AGATCTATAA CGAAATCGGC GGTCGTCAGG AATCTCTGGA AGACCTCACC
GACAACGAGA TTCTGGACCT CGCGAAGAAC CTGCGTAACG GCGTACCGAT GGCTACCCCG
GTTTTCGACG GTGCCAAGGA AAGCGAAATC AAGGCAATGC TCAAGCTGGC AGATATGCCG
GAAAGCGGCC AGATGCAGCT GTTCGACGGT CGTACCGGCA ACAAGTTTGA ACGTGCTGTA
ACGGTTGGCT ACATGTACAT GCTGAAGCTG AACCACTTGG TGGACGACAA GATGCACGCG
CGTTCCACTG GTTCGTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCACAGTTC
GGTGGTCAGC GTTTCGGGGA GATGGAAGTG TGGGCGCTGG AAGCATACTG CGCGGCGTAC
ACTCTGCAGG AAATGCTCAC AGTGAAGTCG GACGATGTGA ACGGTCGTAC CAAGATGTAC
AAAAACATCG TGGACGGCGA TCACCGTATG GAGCCGGGCA TGCCCGAGTC TTTCAACGTG
TTGATCAAAG AAATCCGTTC GCTCGGTATC GATATCGATC TGGAAACCGA ATAA
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| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGATKDQFRD VGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTYAVPL RVKVRLIIFD KESSNKAIKD
IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYT TEQVLDAFYT TNVFHVRGEN
LSLELVPQRL RGEIAVLDIL DDKGKVIVEQ GRRITARHIN QLEKAGIKEL EVPLDYVLGR
TTAKVIVHPA TGEIIAECNT ELNTEILAKI AKAQVVRIET LYTNDIDCGP FVSDTLKIDS
TSNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSPERY DLSAVGRMKF NRRIGRTEIE
GSGVLCKEDI VAVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM GQNNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK
EGLVTEEIVF LSAIEEADHV IAQASAAMND KQELIDELVA VRHLNEFTVK APADVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRIVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
RVQRSDIMAD GPSTDMGELA LGQNMRIAFM AWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVGAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDARA LSIEKSQLDE
IRKDLNEEFR IVEGATFERL RSALVGRVAE GGAGLKKGQE ITNEVLDGLE HGQWFKLRMA
EDALNEQLEK AQAYIVDRRR LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIRRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDIVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKINRMLE EQRKVAELRK FLNEIYNEIG GRQESLEDLT DNEILDLAKN LRNGVPMATP
VFDGAKESEI KAMLKLADMP ESGQMQLFDG RTGNKFERAV TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYCAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EPGMPESFNV LIKEIRSLGI DIDLETE
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