| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4525 |
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| Symbol | rpsD |
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| ID | 3370065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 5391238 |
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| End bp | 5391858 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637654885 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_237593 |
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| Protein GI | 66047752 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.815516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.577839 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTCGTT ACATTGGTCC AAAATGCAAA CTTGCTCGTC GTGAAGGCAC CGATCTCTTT
CTGAAGAGCG GCGTTCGCGC TATCGAATCC AAGTGCAACA TCGAAGCAGC TCCAGGTATC
CACGGCCAAC GTCGTGGTCG CCAGTCCGAT TACGGTACTC AGCTGCGTGA AAAGCAAAAA
GTCCGTCGTA TCTACGGCGT TCTCGAGCGT CAGTTCAGCG GCTACTACAA AGAAGCCGCC
GGCAAGAAAG GTGCAACAGG CGAGAACCTG CTGCAACTGC TCGAATGCCG TCTGGACAAC
GTTGTATACC GCATGGGCTT CGGCTCGACG CGTGCCGAAT CCCGTCAATT GGTTTCGCAC
AAGTCGGTCA GCGTAAACGG CAAAACCGTT AACGTTCCTT CTTATCAGGT TCGTGCTGGC
GACGTTGTTG CTATCCGCGA AAAAGCTAAG AATCAGCTGC GTATTGTCCA GGCTCTCGAT
CTGTGTGCCC AACGTGGCCG CGTAGAATGG GTAGAAGTAG ACACTGAGAA GAAATCGGGC
GTTTTCAAGA ACGTTCCAGC TCGCAGTGAT CTATCCGCCG ACATCAACGA AAGCCTGATT
GTCGAGCTCT ACTCCAAGTA A
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| Protein sequence | MARYIGPKCK LARREGTDLF LKSGVRAIES KCNIEAAPGI HGQRRGRQSD YGTQLREKQK
VRRIYGVLER QFSGYYKEAA GKKGATGENL LQLLECRLDN VVYRMGFGST RAESRQLVSH
KSVSVNGKTV NVPSYQVRAG DVVAIREKAK NQLRIVQALD LCAQRGRVEW VEVDTEKKSG
VFKNVPARSD LSADINESLI VELYSK
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