| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4493 |
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| Symbol | |
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| ID | 3370033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 5354087 |
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| End bp | 5357005 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637654853 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_237561 |
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| Protein GI | 66047720 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.267938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCT TTAAAAGCCT GCTGCCCAAA TCACTGACGT CGCGAATACT GGCGATGTTA
TCCATTCTGA TACTGACCTT TCTGACGACG GGTCTGGTTC TGTTTTATAA AAATCAGCTG
CTTCAGCATA TTGAAGAGAT ACAAGACACC GCCAACATGC TGATCGAGGT TGCCGCGCAA
GCGGTAGAGG AAAGTGTCGT CATCGGCGAT TACGACACTA TCAAAAGAAC CCTCGAAAAA
ACCCTGGCCC GCTCGCCGTT CAAATCGGCC ATGTTTATTG ACCTGTCGGG TGGCGTCATT
CGCCTTGAGG CCGCCAGTGC GCCGCTTGGC AGAGCACCTG CGTGGATAGA GTCTGAAGTC
GCTGCACGAT TATTCGATGT CAATCGTCCG ATCACTATTG GCGGGAAAGA TTACGGCGTG
ATGCGTCTGT CTTTCAACGC CGAGAGAATT GCTGCCGAAC TCTACAGTCT GGTGATCCAG
GCGACACTCT TTGCGGGATT TTTCTTGCTG ATCAGCTTGA TGCTAATGGG GTTCATGATC
AAGCGTTCGC TTGCCCACCT GGGCAAGCTT CACTCTTATG AGGCAGAAAT CGCTTCAGGC
GCAGTGGCAG CAGAAGCGAT GTTGGTCGCT GATGCTCCCA TGGAAATACA GGAGGCTATA
AAAGCCGTAA ACCGTACTGC TGCGAGTATG CGCAATCACT TTGGCCTGCG TATCGAATCG
TTGATGAATA CCTTGGTGCA GCATAAAAAT GCGCTGGATG AGGTGTCCAT CGTTTGCGAA
GTGTCGGCCT CCGGACGTAT CACCTACGTT AACGAGCGAT TCGTCACCAG CTCACAGCAT
TCGCGAGCCG AGCTTTTAGA GTTGACGATC GATGAAGTCT GGACCGGCAT GTCTTCAGCC
AACGAACCGT GGCTATGGGC ACCTGAAAAC AAGGTGTGGA ACGGTGAGGT GAGGCTTTCT
GGTCGTACCG GTAAGGAGGC TTGGCATCAA CGCACTGTCA TACCTATTCT CGATGACTTG
GGCGGCGTTG AAAAATACAT CTGCATCGAC ATCGATATTA CAGATCGAAA AGAATTTGAA
GTGGCGATTC TGGATAACTC CAGAAGGCAA AACCTTATCG CCTTGTTTGG CCAGCAGGCA
TTGACAGAAG AAAACGTCAG TGTGCTAGGT GAACGGGCAG CACTGACTGC GGCGCAAGGA
CTGAAATTGA GCAAGGCCGC TTTATTGGTC GTTGATCGAG TGAGCCATGG GACCATCCTC
CACGCGGGGG TTGGCTTGAC CCGATTTGAA ATCCGCAGCG GTCATCATGA TGATTTTCTG
AACGGTACTG CTCCTTCTGC GGGGTTTGTG ATTAATTCTG ATGCGCCTGA TAATCGCTAC
ACGCTGCTTC CTGCTGAAAC AGTGGACGCT TACACGATTA GAAGTAGCCT GGAGGTTGAT
ATATCCTGCA CGGAGGTTTT CAAGGGCGTG CTTGGGGTGT ATGCCAGCAC GGACCACCCC
TTTACACGTG AAGATGTCAG CTACCTTCAA ACACTTGCCA ACCTCTTGGC CGCCGCGCTT
GAACGGTATG ACGCAAAGAA AAAACTCACC TATCTGGCCG AAAATGATTC GCTCACCCAT
CTGCCTAATC GCTGGTTCCT CAGCAATTAT CTGCGCGAGA TAATCAGTCG GAAAACGTCA
GCGCCAGATG CAGTAAGCGT CATATTCATA GATTTGGACA GATTCAAGGC CGTGAATGAC
ACCATGGGGC ATTCAGTGGG CGATCAATTG CTTATTCAGG CGGGTCGACG CTTGAAAGAC
TGCATAGGTG AGAACAGTGT GGTTGCGCGG CTGGGAGGCG ATGAATTTTC GATCGTCGTC
ACACACTCTG TTTATTCCGA GAGCCTCATC AAATCGCTTG CGACCCATGT TGTTGAGGCG
TTGGGGAAAC CGTTCAACCT TGGCGGCCAG GATATATTCG TTTCGGCGAG TGTCGGCATC
GCTAATTATC CGTTTGACGG GCGTGACACT GGTGTGATCT TGAAGAATGC GGATACCGCC
ATGTACCAGG CGAAGAAAAG TGGCCGTAAT AATTTCAAGT TTTACAACGC CAGGATGAAC
GAAAGTTTAA CCAGGCGCTT GCAAACTGAA ACGCTGTTGC GCGGCGCGCT CGAGCGCGAT
GAGTTTATTC TGCACTTTCA GCCCAAGGTC AGCCTTACCG ATGGCAGGAT AAGTGGTCTG
GAGGCTTTAT TGCGCTGGAA TCACCCTGAG CAAGGCATGG TTTCTCCGGC TGATTTCATC
CCTATTCTTG AGGACACGGG CCTGATCATT CCTGTCGGCG TGTGGGTCAT CCGGAAAGTC
TGCGAAACCC TGAAGCGCTG GGAAGAGAAT CATATCAGGC TGGTGCCGAT CGCCATCAAT
CTGTCCGTCA GGCAGCTTCA GGTAAAAGGC CTGGCTGAGA CCGTCAAGCA TATCGTTGAA
GCGTACGGTA TCAACCCCGC TCTTTTAGAG TTCGAACTGA CCGAGTCGAT GCTGATGATC
GATCCCGAGT CGGCGGTTGA AATACTTCGA GATATAAAGT CGTATGGCAT CAGCCTTTCG
GTCGATGATT TCGGCACGGG CTATTCCAGT CTGGCCTACT TGAAGCGATT TCCTCTTGAT
GCCCTCAAAA TCGACAGGGC GTTCATCAAG GATATAACCA GCAATCATGA GGACGCCGCG
ATCACCAGGG CGGTCATCGT ATTGGCGCAC GAATTGGGTC TTAACGTCAT TGCAGAAGGC
GTCGAAACAG TCGACCAGTT GGAACTGCTC GTGACGTATG GCTGCGATCA AATGCAGGGT
TATCTTTTTA GTAAGCCTGT CATCAGTGAT GAGTGTGCTG CCATGATTAA ATCGTCACGT
AGTCTGGAGA TAGGCTTTTC TGAAAGCGGT GTTGCGTGA
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| Protein sequence | MNFFKSLLPK SLTSRILAML SILILTFLTT GLVLFYKNQL LQHIEEIQDT ANMLIEVAAQ
AVEESVVIGD YDTIKRTLEK TLARSPFKSA MFIDLSGGVI RLEAASAPLG RAPAWIESEV
AARLFDVNRP ITIGGKDYGV MRLSFNAERI AAELYSLVIQ ATLFAGFFLL ISLMLMGFMI
KRSLAHLGKL HSYEAEIASG AVAAEAMLVA DAPMEIQEAI KAVNRTAASM RNHFGLRIES
LMNTLVQHKN ALDEVSIVCE VSASGRITYV NERFVTSSQH SRAELLELTI DEVWTGMSSA
NEPWLWAPEN KVWNGEVRLS GRTGKEAWHQ RTVIPILDDL GGVEKYICID IDITDRKEFE
VAILDNSRRQ NLIALFGQQA LTEENVSVLG ERAALTAAQG LKLSKAALLV VDRVSHGTIL
HAGVGLTRFE IRSGHHDDFL NGTAPSAGFV INSDAPDNRY TLLPAETVDA YTIRSSLEVD
ISCTEVFKGV LGVYASTDHP FTREDVSYLQ TLANLLAAAL ERYDAKKKLT YLAENDSLTH
LPNRWFLSNY LREIISRKTS APDAVSVIFI DLDRFKAVND TMGHSVGDQL LIQAGRRLKD
CIGENSVVAR LGGDEFSIVV THSVYSESLI KSLATHVVEA LGKPFNLGGQ DIFVSASVGI
ANYPFDGRDT GVILKNADTA MYQAKKSGRN NFKFYNARMN ESLTRRLQTE TLLRGALERD
EFILHFQPKV SLTDGRISGL EALLRWNHPE QGMVSPADFI PILEDTGLII PVGVWVIRKV
CETLKRWEEN HIRLVPIAIN LSVRQLQVKG LAETVKHIVE AYGINPALLE FELTESMLMI
DPESAVEILR DIKSYGISLS VDDFGTGYSS LAYLKRFPLD ALKIDRAFIK DITSNHEDAA
ITRAVIVLAH ELGLNVIAEG VETVDQLELL VTYGCDQMQG YLFSKPVISD ECAAMIKSSR
SLEIGFSESG VA
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