| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4479 |
|---|
| Symbol | |
|---|
| ID | 3370019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5340942 |
|---|
| End bp | 5341790 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637654839 |
|---|
| Product | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase |
|---|
| Protein accession | YP_237547 |
|---|
| Protein GI | 66047706 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGC TACGTTACGG TGAGAAGGGT CTGGAGAAGC CAGGCGTGCT TGATGCTGCC
AACCAGATCC GTGACCTGTC CGCACACGTC AAGGATATCG CTGGCGATGT GCTGAGCCCT
GCAGGTCTTG CAAGCCTGGC TGCGCTGGAT CCCGAGAGCC TGCCTCTGGT TCCGGGCCAG
CCACGCATCG GGCCGTGTGT CGGGCAGGTC GGCAAGTTCA TCTGCATAGG CTTGAACTAC
GCCGACCACG CAGCCGAGTC GCAGATGGAA GTGCCGAAGG AGCCGATCAT CTTCAACAAA
TGGACCAGCG CAATTTGCGG CCCCAATGAT GATGTCCAGA TCCCCCGTGG GTCGCTCAAG
ACTGACTGGG AGGTCGAGCT GGGCGTGATC ATCGGCAAGG GCGGGCGCTA CATCGACGAA
GCCGATGCCA TGGAGCATGT GGCCGGGTAT TGCGTGATCA ACGATGTGTC CGAGCGCGAA
TGGCAGCTCG AGCGCGGCGG GACCTGGGAC AAGGGTAAAG GCTTCGATAC CTTCGGCCCG
CTCGGTCCGT GGCTGGTGAC CCGCGATGAA GTTGCCGACC CTCACTCGCT CGACCTGTGG
CTGGAAGTGG ATGGCCATCG TTATCAGAAT GGCAATACGC GCACGTTGAT TTTCAGCGTG
CCGCAACTGA TCGCCTACCT GAGCCGGTGC ATGAGCCTGC AACCAGGCGA TGTCATCTCG
ACGGGGACGC CACCGGGTGT GGGGCAGGGC GTGAAGCCAC AACCTGTCTT CCTGCGTGCG
GGGCAACGCA TACGTCTGGG GATCGCGGGG CTGGGCGAGC AGAATCAATT GACCGTACAG
GCCGACTGA
|
|---|
| Protein sequence | MKLLRYGEKG LEKPGVLDAA NQIRDLSAHV KDIAGDVLSP AGLASLAALD PESLPLVPGQ
PRIGPCVGQV GKFICIGLNY ADHAAESQME VPKEPIIFNK WTSAICGPND DVQIPRGSLK
TDWEVELGVI IGKGGRYIDE ADAMEHVAGY CVINDVSERE WQLERGGTWD KGKGFDTFGP
LGPWLVTRDE VADPHSLDLW LEVDGHRYQN GNTRTLIFSV PQLIAYLSRC MSLQPGDVIS
TGTPPGVGQG VKPQPVFLRA GQRIRLGIAG LGEQNQLTVQ AD
|
|---|
| |