Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4387 |
Symbol | |
ID | 3369927 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 5248303 |
End bp | 5250651 |
Gene Length | 2349 bp |
Protein Length | 782 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637654747 |
Product | penicillin-binding protein 1C |
Protein accession | YP_237455 |
Protein GI | 66047614 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAACCTG AATTTCTTCT GCGCCTGCCG CGAACGTTCA AGTGGCTGGC GGGCGCGATC ATGCTGCTGA TCGCCCTCCT CTGGCTGGCT GACCGACTCT GGCCGCTGCC ACTGCCCAGG GACGATCTGG CTCGCGTTGT GCTGGCCGAG GACGGTACAC CACTGTGGCG CTTCGCCGAT ACCAATGGCG TATGGCGCTA TCCGGTCAGC AACGCGCAGG TCTCGCCCTA CTACCTCGAA GCCCTGCTGA CCTACGAAGA CCGCTGGTTC TACAGCCATC CCGGGGTCAA CCCGCTGGCG CTGTTGCGCG CCACCTGGCA AAACCTCAGC GGTGCCCGTG TAGTCTCAGG CGGCAGCACA CTGTCGATGC AAGTGGCGCG GTTGCTCGAT CCGCATTCAC GTACGTTATC CGGCAAGTTT CGCCAGCTGT GGCGCACGCT GCAGCTGGAG TGGCACCTGT CCAAGGATCA GATCCTCAGT CTGTACCTCA ATCGCGCCCC GTTCGGCGGC ACACTGCAAG GCGTCGCAGC CGCCAGTTGG GCCTACCTGG GCAAGTCGCC GCAAAACCTG ACCCGCGCCG AGGCGGCATT GCTGGCGGTG CTGCCACAGG CGCCTAGCCG TCTGCGTCCT GATCGTCACC CGCAGCGCGC GCAACAGGCC CGCGATAAGG TGTTGAGACG TCTGGCCGAG TTTCAGGTGT GGCCGCGAGC AAGCGTGAAC GAAGCACTGG AAGAGCCTTT ATGGCTGGCG CCGCGACAGG AACCGAGCCT GGCGCCGCTG CTGGCCCGAC GCCTGAATCG ACCCAACAGC CCGCCACTGA TCCGCACCAC GCTGGACGCC TCACTGCAAC GACGCATGGA AGACCTGCTG ATGGGCTGGC GCGCACGCCT CCCGGAGCGA ACGTCGGCAG CGATTCTGGT GGTCGAGGCT GAGAACATGG CCGTACGCGC GTACGTGGGC TCGGTGGACA TCAACGACGC CAAGCGTTTC GGCCACGTGG ACATGGTCAC CGCCTTGCGT TCGCCGGGCT CGACGCTCAA GCCGTTCCTG TACGGCATGG CTATGGACGC CGGGCTGATC CATTCCGAAT CGCTGATGCA GGATGTGCCG CGGCGCTATG GCGACTATCG ACCGGGCAAC TTTTCGAGCG GCTTCGGCGG ACCGGTGGCA GTCAGTTCGG CGCTGTCGAT GTCCCTCAAC CTGCCTGCCG TGCAATTGCT GGAGGTCTAC GGGCCGAAGC GCTTCGCCGC CGAACTGCGC AATGGCGGCG TGCCCCTGAG CCTGCCGCCG CTGGCCGAGC CCAGTCTGGC ACTGATTCTT GGTGGCGCGG GCAGTCGGTT AGAGGACTTG GTGACAGGCT ACAGCGCCTT CGCGCGCGGC GGGCGCAGTG CCGATGTTCG ATTGCAACCG CAGGACCGAC TGCGCGAGCG GCGCATGATG TCACCGGGCG CTGCGTGGAT CATTCGCCGC ATTCTCAGTG GTCAGTCGCG CCCGGACATC GACCCGCGCG CCGAGCTGGT ACAGCGTCCG CAACTGGCCT GGAAAACCGG CACCAGCTAT GGCTTCCGCG ATGCCTGGGC GATTGGCGTC GGACCGCGCT TTCTGGTCGG TGTGTGGATC GGTCGACCGG ATGGCACACC GGTGCCAGGG CAGTTCGGGC TGGCTTCGGC AGCGCCGCTG ATGCTTCAGG TGCACGATGT ACTGGTCAAT CGCGACAGCC AGCGCGGGAT CGCCGCACCG ATGCAACCCG TGCCGCTGAA CGTCGGTGTA GCCGCCATCT GCTGGCCACT GGGTCAACCG ATGAGCAAAA GCGCCCCCAA TTGCCGGCGC CAACGCTTCG CCTGGACGCT GGACGGCACC ACGCCACCCA CCCTGCAAGC GGCCGACCAA CCGCTCGGGC TGGGTTTGCA GGAACGTGTC TGGATCAATG CCAAGGGGTT GCGCGTCGCG GCCAATTGCC CGGACGCCCG AGCGCAGGAC ATCGCGCTGT GGCCTGCGCC TCTGGAGCCC TGGCTGCCCA GAGCAGAGCG GCGTGATGCA CGCCTGCCAC CCGCTGACCC GGATTGCCCG CCACAGAACC TGAACCTCGC GCCCCCGCTG AGCATTGTCG GTGTGCGCGA AGGCGACAAC CTGCGCCTGC CTGCCGCCAG TCGTCAGGCT TTACGCCTCA CGCTCTCGGC ACTCGGCGGC AGTGGCCATC GCTGGTGGTT TATCGATGGC AAACCTCTGG CAGACACCGA CACCCGGCAA GACTTCACCC CCACCCTGAG CAAACCGGGG CGTTATCAGT TAAGCGTGCT GGACGAAAGC GGTCAGACGG CGCGGGTTGA ATTCAGCGTG GTGGAGTGA
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Protein sequence | MKPEFLLRLP RTFKWLAGAI MLLIALLWLA DRLWPLPLPR DDLARVVLAE DGTPLWRFAD TNGVWRYPVS NAQVSPYYLE ALLTYEDRWF YSHPGVNPLA LLRATWQNLS GARVVSGGST LSMQVARLLD PHSRTLSGKF RQLWRTLQLE WHLSKDQILS LYLNRAPFGG TLQGVAAASW AYLGKSPQNL TRAEAALLAV LPQAPSRLRP DRHPQRAQQA RDKVLRRLAE FQVWPRASVN EALEEPLWLA PRQEPSLAPL LARRLNRPNS PPLIRTTLDA SLQRRMEDLL MGWRARLPER TSAAILVVEA ENMAVRAYVG SVDINDAKRF GHVDMVTALR SPGSTLKPFL YGMAMDAGLI HSESLMQDVP RRYGDYRPGN FSSGFGGPVA VSSALSMSLN LPAVQLLEVY GPKRFAAELR NGGVPLSLPP LAEPSLALIL GGAGSRLEDL VTGYSAFARG GRSADVRLQP QDRLRERRMM SPGAAWIIRR ILSGQSRPDI DPRAELVQRP QLAWKTGTSY GFRDAWAIGV GPRFLVGVWI GRPDGTPVPG QFGLASAAPL MLQVHDVLVN RDSQRGIAAP MQPVPLNVGV AAICWPLGQP MSKSAPNCRR QRFAWTLDGT TPPTLQAADQ PLGLGLQERV WINAKGLRVA ANCPDARAQD IALWPAPLEP WLPRAERRDA RLPPADPDCP PQNLNLAPPL SIVGVREGDN LRLPAASRQA LRLTLSALGG SGHRWWFIDG KPLADTDTRQ DFTPTLSKPG RYQLSVLDES GQTARVEFSV VE
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