| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4265 |
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| Symbol | |
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| ID | 3369805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5083463 |
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| End bp | 5087299 |
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| Gene Length | 3837 bp |
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| Protein Length | 1278 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637654625 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_237333 |
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| Protein GI | 66047492 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCCACTT CAACGCCTCT GTCGTCATCC AGTGTCGCTA CAGACAGTGC GACCAGGCCT
CTGCGTGGGT CAGTGAAAGG CATGCTGGCG GGCCTGGTTC TGGTGGTGCT TGCCCTGTTG
CTCTGGCAAC TGATCGAGCA GTTTCACCAG ACTCAGGAGC GTCAGCGTCA GCGCAGTCTG
GAGTACAGCG TGCAGCTGTC CGACCGGATG AGTCTGAACA TGGCGCTCAA GGCGCAGATC
GCCATGAACC TGCTGGACGA GACGCTCTCC TCCGGGGAGC AACTGGAGCA GCCGACGACG
CTGTTGAACC TGCGCACTGC CCTGCCCGCG CTGCGCAGCG TCGCTCGCCT GAACCCGGCG
GGTGAGATTG TCAGTGACAG CGCCGAGGCC TCGCGCGACG CTGAGTTTCT CGGACGGGCC
ATGAAACAGG CGCGAGGTCG CCCCTACTTC TATACCAACT CCGAAGACGG CAACCAGATT
TATATACTGA TTCGCCTGGG CAACGGCGTG AGCGGCGATT ACTGGGCATT GCGCGTGGCG
CCCGACGCCT TGAAGGAACT TGCCAGCCAG CCGGCTCAGG ACTTTCAGTA CCTGTGGCGT
CTCGAACAGC GCAAGACGCA GCGGGTCATT CTCCATGAAC CGGTGGCCGC CAACGACGCG
GACAGTGGCC TGTCCGACAC CATTCTGCTT CAGCCGCTGA GCAACAGTGA CTGGCAACTG
CGGGGGCTGT TCGACACCTA CAAGGCCCGC AGCGAACTGC TTGCGCCGCT GATCGGCAAG
TGCCTGATCG GCGTGCTGCT GTCGATCCTG CCGTTGCTCG CGCTGATGAG CCTGCGCAGA
CGCCAGCGCC AGATGCTGCA AAGCCGACGC CGCTACCGGG ATATCTTCGA GGGCGCGGGC
GTCGCAATCT GTGTCATGGA CATGTCCGGC CTGCAGGAGC AACTGGAAGC ACTTGAGGTC
AGGAACGGCG AGGACTTCGA GCGTCTGCTC AAAAGCCAGC CCGCCTCCCT GAAACGCCTG
TTGCAGCAAT TGCGCATCAG CGAACTCAAC GAAGTCGCTC TGAGCCTGCT GGACATCGAG
CACCGCGAAC AGGCATGGCA ACCGTTGATC GAGGGTGAAT CGCGCTCGCG TCCGGGGGTC
GGCATTCCGA TCATTCAGGC GGTTCTCGCC GGACAGCCGC GACTGGAACT GGAAATCTGC
CTGACCCGTG CAGGCGGTCA GGATCAGCAC CTGTGGCTGG TCATGCGCCT GCCCGAGACA
CGCGGCGACT TCGATGCCGT CATTCTCAGC ATTGGTGATA TCACCAGCCG TAAACAGGTC
GAGCTGTCGT TGCTGGACCG CGAGAGCTTC TGGTCCGACG TGGTCCAGAC CGTTCCCGAC
CATCTGTACG TTCAGGACGT GCTCAGCCAG CGGGTGATCT ACAGCAACCA CCACTTCGGC
TACACGCTGG GTTACAGCAA GTCAGAACTG CACGCCATGG GCGAGTTCTT CTGGGAAGTC
CTGCTGCACC CCGACGACGC CCGACACTAT CAGGACATGC GCCTGCGCCA GCGTCACCAT
GGGCACAATG AATTACTGCA AAGCGTGTTG CGCTTTCGGG ACCGCGAGAG CAACTGGCGG
AGCTTCGACA TTCGCGAGCA GGCGCTGGCC TGGGACGCAG AAGACCGGGT CACCCGCATC
ATCGGCATTG CCAAGGACAT TACCGAGCAG GTCGCGTCCA GCCAGTCGTT GCGTGACAGC
GAACAGCGTT ACCGCATGCT CGCCGAAAGC ATCAGTGACG TGATTTTCTC CACCGACGGC
CGGCTGGCAG TCAACTACGT CAGCCCTTCG GTAGAACGTG CGCTGGGCTA CAGCGCCGAG
TGGATCATAC AGAACGGCTG GTCCGCCGCG ATTGCCAACC CCCAGCAAAT AGTCGGTTTT
GATGCGCTCA TGAGCCGCAT CGACAAGGTC CTCGACAAAC CTCAGGAACT CGCCAGGCTG
CGCGAAGAAG TCACCACCCG AATGTTCCTG TTCGACTGCC TGCGTGCCGA CGGTCGCAAG
ATCCCGGTGG AACTGCGCGT GGTGCTGGTG TGGGGCGAAC ACGGCAATTT CGAGGGCATC
TTCGGCGTGG GCCGGGACAT CAGTCAGCAG CGTCGGGCCG AGAAAGACCT GCGCATGGCT
GCCACTGTAT TCGAGCATTC GACATCCGCC ATCCTGATTA CCGACCCCGC CGGCTATATC
GTGCAGGCCA ACGAGGCCTT TACCCGTGTC AGTGGCTATG AAGTGGCTCA GGTGCTCGAT
CAGTTGCCGG GCATGCTCAC CGTGGAATCA GAACAGGAAA CCCGCCTGCG CCACATTCTC
AGGCAGTTGA ACGGACAAGG CACGTGGGAA GGTGAAATCC GGCTCAAGCG CCGTAACGGC
GAACACTACC CGGCCTGGGT CGGCATTACC GCAGTCCTCG ACGACGAAGG CGATCTGGCC
AGCTACGTGT GCTTCTTCAG CGATATCAGC GAACGCAAGG CCAGCGAGGA CCGTATCCAC
CGTCTGGCCT ACTACGACGC GCTGACTCAC CTGCCCAACC GCACCCTGTT CCAGGATCGC
CTGCATTCGG CGCTGCAGCA CGCCGAGCGC CAACAGGCCT GGGTCGTGCT GATGTTCCTC
GACCTCGACC GCTTCAAACC GATCAACGAC TCCCTGGGGC ATGCCGCGGG CGACCGGATG
CTGCAGGAAA TGGCCACGCG GCTGCTCGCC TGTGTGTCGG TGGATGACAC CGTGGCCCGC
ATGGGCGGTG ATGAATTCAC CCTGCTGCTG GAACCGGATG AAAGCCGTGA AGCGGCGCTG
AATCGCGCCA TTCACGTCGC CGAACGCATT CTGACCAGCC TGATCACGCC GTTCGTGCTG
GAAGGCCGCG AGTTCTTTGT GACCGCCAGT ATCGGCATCG CACTCAGCCC GCAGGACGGC
AAGGAACTGA GTCAGTTGAT GAAGAACGCC GACACGGCGA TGTATCACGC CAAAGAGCGC
GGCAAGAACA ACTTCCAGTT CTATCAGGCC GACATGAACG CGACCGCGCT GGAGCGTCTG
GAGCTGGAAA GCGACTTGCG CCACGCCCTG GAGCAGAAGG AGTTCACCCT CTTCTACCAA
CCGCAGTTCA GCGGCGACGG CAAACGCCTG ACGGGCGCGG AAGCCCTGTT GCGCTGGCGC
CATCCGCGCC GCGGGCTGGT GCCGCCCAAC GACTTCATCC CGGTGCTCGA AGAGCTCGGG
CTGGTCGTGG AAGTCGGCGA CTGGGTCCTG GCCGAAGCCT GCCGTCAACT CAAGCACTGG
CATCAGGCCA GGGTTCGCGT GCCCAAGGTG TCGGTCAACA TCTCGGCACG GCAGTTCTCG
GACGGTCAGC TCGGTAAACG CATCGCCCAC ATACTCGAAC AGGCCGGCCT GTCACCCGCC
TGTCTGGAAC TGGAGCTGAC CGAAAGCATC CTGATGCGCG AAGTCAACGA GGCCATGCAG
ATACTCGATG GCCTCAAGAA CCTCGGCCTG AGTATCGCCG TCGATGACTT CGGCACCGGC
TACTCGTCGC TGAACTACCT CAAACAGTTC CCGATCGACG TGCTGAAGAT CGACCGCACC
TTCGTCGATG GCCTGCCGTC CGGAGAGCAG GACGCCCAGA TCGCCCGCGC CATCATCGCC
ATGGCCCACA GCCTGAACCT CTCGGTGATC GCCGAAGGCG TAGAGACCCA CGAGCAACTT
GAGTTTCTCC GCGAACACGA CTGCGACGAA GTCCAGGGCT ACCTGTTCGG CCGCCCGATG
CCACCTGCCC AGTTCGAAGC GCAATTCAGC AACGACGCGT TGTTCATGCT GGATTGA
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| Protein sequence | MPTSTPLSSS SVATDSATRP LRGSVKGMLA GLVLVVLALL LWQLIEQFHQ TQERQRQRSL
EYSVQLSDRM SLNMALKAQI AMNLLDETLS SGEQLEQPTT LLNLRTALPA LRSVARLNPA
GEIVSDSAEA SRDAEFLGRA MKQARGRPYF YTNSEDGNQI YILIRLGNGV SGDYWALRVA
PDALKELASQ PAQDFQYLWR LEQRKTQRVI LHEPVAANDA DSGLSDTILL QPLSNSDWQL
RGLFDTYKAR SELLAPLIGK CLIGVLLSIL PLLALMSLRR RQRQMLQSRR RYRDIFEGAG
VAICVMDMSG LQEQLEALEV RNGEDFERLL KSQPASLKRL LQQLRISELN EVALSLLDIE
HREQAWQPLI EGESRSRPGV GIPIIQAVLA GQPRLELEIC LTRAGGQDQH LWLVMRLPET
RGDFDAVILS IGDITSRKQV ELSLLDRESF WSDVVQTVPD HLYVQDVLSQ RVIYSNHHFG
YTLGYSKSEL HAMGEFFWEV LLHPDDARHY QDMRLRQRHH GHNELLQSVL RFRDRESNWR
SFDIREQALA WDAEDRVTRI IGIAKDITEQ VASSQSLRDS EQRYRMLAES ISDVIFSTDG
RLAVNYVSPS VERALGYSAE WIIQNGWSAA IANPQQIVGF DALMSRIDKV LDKPQELARL
REEVTTRMFL FDCLRADGRK IPVELRVVLV WGEHGNFEGI FGVGRDISQQ RRAEKDLRMA
ATVFEHSTSA ILITDPAGYI VQANEAFTRV SGYEVAQVLD QLPGMLTVES EQETRLRHIL
RQLNGQGTWE GEIRLKRRNG EHYPAWVGIT AVLDDEGDLA SYVCFFSDIS ERKASEDRIH
RLAYYDALTH LPNRTLFQDR LHSALQHAER QQAWVVLMFL DLDRFKPIND SLGHAAGDRM
LQEMATRLLA CVSVDDTVAR MGGDEFTLLL EPDESREAAL NRAIHVAERI LTSLITPFVL
EGREFFVTAS IGIALSPQDG KELSQLMKNA DTAMYHAKER GKNNFQFYQA DMNATALERL
ELESDLRHAL EQKEFTLFYQ PQFSGDGKRL TGAEALLRWR HPRRGLVPPN DFIPVLEELG
LVVEVGDWVL AEACRQLKHW HQARVRVPKV SVNISARQFS DGQLGKRIAH ILEQAGLSPA
CLELELTESI LMREVNEAMQ ILDGLKNLGL SIAVDDFGTG YSSLNYLKQF PIDVLKIDRT
FVDGLPSGEQ DAQIARAIIA MAHSLNLSVI AEGVETHEQL EFLREHDCDE VQGYLFGRPM
PPAQFEAQFS NDALFMLD
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